(Q30332774)

18 June 2017

title

An in silico Exploration of the Neutral Network in Protein Sequence Space (English)

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

27 December 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12713943

27 December 2023

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

27 December 2023

modeling and simulation

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https://api.crossref.org/works/10.1006/JTBI.2003.3209

27 December 2023

1 reference

Takuyo Aita

1

1 reference

18 June 2017

Motonoru Ota

2

1 reference

18 June 2017

Yuzuru Husimi

3

1 reference

18 June 2017

language of work or name

English

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publication date

1 April 2003

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18 June 2017

21 April 2003

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12713943

full work available at URL

27 December 2023

number of pages

15

1 reference

based on heuristic

inferred from page(s)

https://api.elsevier.com/content/article/PII:S0022519303932097?httpAccept=text/xml

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

https://api.elsevier.com/content/article/PII:S0022519303932097?httpAccept=text/plain

27 December 2023

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

Journal of Theoretical Biology

27 December 2023

published in

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18 June 2017

volume

221

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18 June 2017

issue

4

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18 June 2017

page(s)

599-613

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maintained by WikiProject

18 June 2017

WikiProject Mathematics

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cites work

A new method for analyzing protein sequence relationships based on Sammon maps

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Theory of evolutionary molecular engineering through simultaneous accumulation of advantageous mutations

27 December 2023

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A cross-section of the fitness landscape of dihydrofolate reductase

27 December 2023

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Surveying a local fitness landscape of a protein with epistatic sites for the study of directed evolution

27 December 2023

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Statistical formulae of the energy distribution among a globular protein structure ensemble.

27 December 2023

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 December 2023

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1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force

27 December 2023

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Exploring protein sequence space using knowledge-based potentials.

27 December 2023

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Exploring the conformational properties of the sequence space between two proteins with different folds: an experimental study

27 December 2023

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Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

27 December 2023

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Protein alchemy: changing beta-sheet into alpha-helix

27 December 2023

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Progress in fold recognition.

27 December 2023

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Continuity in evolution: on the nature of transitions

27 December 2023

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Evolution of model proteins on a foldability landscape.

27 December 2023

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Profile analysis: detection of distantly related proteins

27 December 2023

15

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Detection of protein fold similarity based on correlation of amino acid properties

27 December 2023

16

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Touring protein fold space with Dali/FSSP

27 December 2023

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Smoothness within ruggedness: the role of neutrality in adaptation.

27 December 2023

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Design and synthesis of a globin fold

27 December 2023

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Functional proteins from a random-sequence library

27 December 2023

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Directed evolution of enzyme catalysts

27 December 2023

22

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Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability

27 December 2023

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Assessment of pseudo-energy potentials by the best-five test: a new use of the three-dimensional profiles of proteins

27 December 2023

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Knowledge-based potential defined for a rotamer library to design protein sequences

27 December 2023

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Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

27 December 2023

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Generic properties of combinatory maps: Neutral networks of RNA secondary structures

27 December 2023

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Demonstration of the importance and usefulness of manipulating non-active-site residues in protein design

27 December 2023

28

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One sequence, two ribozymes: implications for the emergence of new ribozyme folds

27 December 2023

29

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From sequences to shapes and back: a case study in RNA secondary structures.

27 December 2023

30

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Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles

27 December 2023

32

1 reference

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

27 December 2023

33

1 reference

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Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

27 December 2023

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An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries

27 December 2023

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Rational evolutionary design: The theory of in vitro protein evolution

27 December 2023

36

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Additivity of mutational effects in proteins

27 December 2023

38

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

Roles of mutation and recombination in the evolution of protein thermodynamics

27 December 2023

39

1 reference

https://api.crossref.org/works/10.1006/JTBI.2003.3209

Properties of artificial proteins with random sequences

27 December 2023

40

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https://api.crossref.org/works/10.1006/JTBI.2003.3209

27 December 2023

Identifiers

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18 June 2017

1 reference