(Q30365149)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Derek N Woolfson

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Marc Bruning

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Amaurys Á Ibarra

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Gail J Bartlett

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Andrew R Thomson

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Richard B Sessions

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

R Leo Brady

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

26 July 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

3029-3035

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

issue

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

10 March 2020

copyright license

start time

7 November 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infection

3 June 2018

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Accessibility, reactivity, and selectivity of side chains within a channel of de novo peptide assembly

3 June 2018

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Principles for designing ideal protein structures

3 June 2018

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LOGICOIL--multi-state prediction of coiled-coil oligomeric state

3 June 2018

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New currency for old rope: from coiled-coil assemblies to α-helical barrels.

3 June 2018

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A de novo peptide hexamer with a mutable channel

3 June 2018

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Probing designability via a generalized model of helical bundle geometry

3 June 2018

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PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

3 June 2018

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Improved prediction of protein side-chain conformations with SCWRL4

3 June 2018

1 reference

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A periodic table of coiled-coil protein structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

CC+: a relational database of coiled-coil structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

3 June 2018

1 reference

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A seven-helix coiled coil

3 June 2018

1 reference

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Toward high-resolution de novo structure prediction for small proteins.

3 June 2018

1 reference

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The design of coiled-coil structures and assemblies

3 June 2018

1 reference

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The structure of alpha-helical coiled coils

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Protein structure prediction using Rosetta

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

The structure of bovine IF(1), the regulatory subunit of mitochondrial F-ATPase

3 June 2018

1 reference

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A normalized root-mean-square distance for comparing protein three-dimensional structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Ab initio protein structure prediction using physicochemical potentials and a simplified off-lattice model.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Comparative protein structure modeling of genes and genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export

3 June 2018

1 reference

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Buried polar residues and structural specificity in the GCN4 leucine zipper

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

The crystal structure of a five-stranded coiled coil in COMP: a prototype ion channel?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Predicting oligomerization states of coiled coils

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Crystal structure of an isoleucine-zipper trimer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Computer modelling of the alpha-helical coiled coil: packing of side-chains in the inner core

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

The complexity and accuracy of discrete state models of protein structure

3 June 2018

1 reference

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Helix to helix packing in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

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Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Predicting coiled coils from protein sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201159

HELANAL: a program to characterize helix geometry in proteins.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

The packing of α-helices: simple coiled-coils

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

Rapid comparison of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

Generalized Crick equations for modeling noncanonical coiled coils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU502

10.1093/BIOINFORMATICS/BTU502

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/WoodBIBTSBW14

10 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25064570%20AND%20SRC:MED&resulttype=core&format=json