(Q30367129)

13 August 2017

Matt: local flexibility aids protein multiple structure alignment. (English)

1 reference

13 August 2017

Lenore Cowen

3

0 references

Bonnie Berger

series ordinal

2

object named as

Bonnie Berger

1 reference

13 August 2017

Matthew Menke

1

1 reference

13 August 2017

1 January 2008

1 reference

PLOS Computational Biology

13 August 2017

1 reference

13 August 2017

4

1 reference

13 August 2017

1

1 reference

13 August 2017

e10

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

start time

11 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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3 June 2018

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3 June 2018

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Sequence comparison and protein structure prediction.

3 June 2018

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Multiple sequence alignment.

3 June 2018

1 reference

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Flexible protein-protein docking

3 June 2018

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3 June 2018

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Multiple flexible structure alignment using partial order graphs.

3 June 2018

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Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

3 June 2018

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Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins

3 June 2018

1 reference

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Approximate protein structural alignment in polynomial time

3 June 2018

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A method for simultaneous alignment of multiple protein structures

3 June 2018

1 reference

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Prediction of protein function from protein sequence and structure

3 June 2018

1 reference

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Multiple structural alignment by secondary structures: algorithm and applications

3 June 2018

1 reference

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Flexible structure alignment by chaining aligned fragment pairs allowing twists

3 June 2018

1 reference

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MASS: multiple structural alignment by secondary structures

3 June 2018

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MolMovDB: analysis and visualization of conformational change and structural flexibility

3 June 2018

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Evolution of protein structures and functions

3 June 2018

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Fold change in evolution of protein structures

3 June 2018

1 reference

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DaliLite workbench for protein structure comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Protein structure alignment using environmental profiles.

3 June 2018

1 reference

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Threading with explicit models for evolutionary conservation of structure and sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Twilight zone of protein sequence alignments

3 June 2018

1 reference

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HOMSTRAD: a database of protein structure alignments for homologous families

3 June 2018

1 reference

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

A unified statistical framework for sequence comparison and structure comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Comparison of protein structures using 3D profile alignment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Enlarged representative set of protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

SCOP: a structural classification of proteins database for the investigation of sequences and structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

The relation between the divergence of sequence and structure in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Quad-trees, oct-trees, and k-trees: a generalized approach to recursive decomposition of euclidean space.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

3DCoffee: combining protein sequences and structures within multiple sequence alignments

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Flexible protein alignment and hinge detection

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Structure comparison and structure patterns

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

FLEXS: a method for fast flexible ligand superposition.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186361

Do aligned sequences share the same fold?

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18193941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein structural alignments and functional genomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18193941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SABmark--a benchmark for sequence alignment that covers the entire known fold space

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18193941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0040010

1 reference

journals/ploscb/MenkeBC08

13 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

2186361

13 August 2017

PubMed publication ID

18193941

1 reference

PMC publication ID

2186361