(Q30368576)

21 June 2017

Contact density affects protein evolutionary rate from bacteria to animals. (English)

1 reference

21 June 2017

2

D Allan Drummond

1 reference

21 June 2017

Claus O Wilke

3

0 references

Tong Zhou

series ordinal

1

1 reference

8 January 2019

1 April 2008

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Journal of Molecular Evolution

21 June 2017

1 reference

21 June 2017

66

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21 June 2017

395-404

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21 June 2017

4

1 reference

https://scigraph.springernature.com/pub.10.1007/s00239-008-9094-4

21 June 2017

0 references

cites work

The pattern of amino acid replacements in alpha/beta-barrels

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https://api.crossref.org/works/10.1007%2FS00239-008-9094-4

Separate domains of the Ran GTPase interact with different factors to regulate nuclear protein import and RNA processing

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00239-008-9094-4

Integrating high-throughput and computational data elucidates bacterial networks

21 January 2018

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12 December 2020

Thermodynamic prediction of protein neutrality

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12 December 2020

Relative contributions of structural designability and functional diversity in molecular evolution of duplicates

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12 December 2020

Protein dispensability and rate of evolution

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12 December 2020

The designability hypothesis and protein evolution

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12 December 2020

Relating three-dimensional structures to protein networks provides evolutionary insights

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12 December 2020

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

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12 December 2020

Dissecting the regulatory circuitry of a eukaryotic genome

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12 December 2020

Highly expressed genes in yeast evolve slowly.

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12 December 2020

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

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12 December 2020

The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens.

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12 December 2020

The network of sequence flow between protein structures.

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12 December 2020

Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

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12 December 2020

Do essential genes evolve slowly?

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12 December 2020

Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks

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12 December 2020

Mechanism of clathrin basket dissociation: separate functions of protein domains of the DnaJ homologue auxilin

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12 December 2020

Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

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12 December 2020

Symmetry and the energy landscapes of biomolecules

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12 December 2020

Assessing the impact of secondary structure and solvent accessibility on protein evolution.

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12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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12 December 2020

Specificity in protein interactions and its relationship with sequence diversity and coevolution

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12 December 2020

Evolutionary rate in the protein interaction network

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12 December 2020

Emergence of Preferred Structures in a Simple Model of Protein Folding

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12 December 2020

Structural determinants of the rate of protein evolution in yeast.

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12 December 2020

A gene expression map for the euchromatic genome of Drosophila melanogaster.

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12 December 2020

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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12 December 2020

Context-dependent optimal substitution matrices

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12 December 2020

Functional genomic analysis of the rates of protein evolution

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12 December 2020

A single determinant dominates the rate of yeast protein evolution

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12 December 2020

Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets

1 reference

12 December 2020

Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.

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12 December 2020

A gene atlas of the mouse and human protein-encoding transcriptomes

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12 December 2020

Why highly expressed proteins evolve slowly

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12 December 2020

Distinct centromere domain structures with separate functions demonstrated in live fission yeast cells

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12 December 2020

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

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12 December 2020

Specific correlations between relative synonymous codon usage and protein secondary structure.

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12 December 2020

Significant impact of protein dispensability on the instantaneous rate of protein evolution.

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12 December 2020

An integrated view of protein evolution

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12 December 2020

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

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12 December 2020

Modularity and evolutionary constraint on proteins

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12 December 2020

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

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12 December 2020

PAML: a program package for phylogenetic analysis by maximum likelihood

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12 December 2020

Genomic function (communication arising): Rate of evolution and gene dispensability

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12 December 2020

Protein structure and evolutionary history determine sequence space topology

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12 December 2020

Structure, function, and evolution of transient and obligate protein-protein interactions

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12 December 2020

GTOP: a database of protein structures predicted from genome sequences

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12 December 2020

Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

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12 December 2020

Natural selection of more designable folds: a mechanism for thermophilic adaptation

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12 December 2020

Structural determinant of protein designability

1 reference

12 December 2020

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

12 December 2020

An analysis of determinants of amino acids substitution rates in bacterial proteins.

1 reference

12 December 2020

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

1 reference

12 December 2020

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

1 reference

12 December 2020

10.1007/S00239-008-9094-4

Identifiers

DOI

1 reference

PubMed ID

18379715

Dimensions Publication ID

21 June 2017

0 references

1 reference

PubMed ID

18379715