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Genome assembly forensics: finding the elusive mis-assembly
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scholarly article
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Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
review article
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stated in
Europe PubMed Central
title
Genome assembly forensics: finding the elusive mis-assembly
(English)
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stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
author
Michael C. Schatz
series ordinal
2
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Europe PubMed Central
PMCID
2397507
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4 September 2017
Mihai Pop
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3
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Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
Adam Phillippy
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Adam M Phillippy
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1
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language of work or name
English
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based on heuristic
inferred from title
publication date
14 March 2008
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stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
published in
Genome Biology
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stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
volume
9
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stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
page(s)
R55
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Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
issue
3
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Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
describes a project that uses
MUMmer
object named as
MUMmer
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/gb-2008-9-3-r55
0 references
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20 June 2018
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20 June 2018
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20 June 2018
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An intermediate grade of finished genomic sequence suitable for comparative analyses
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20 June 2018
The genome Assembly Archive: a new public resource
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20 June 2018
Quality assessment of the human genome sequence
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20 June 2018
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20 June 2018
PCAP: a whole-genome assembly program
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PubMed Central
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20 June 2018
Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence
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20 June 2018
Whole-genome sequence assembly for mammalian genomes: Arachne 2.
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20 June 2018
The phusion assembler
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20 June 2018
Fast algorithms for large-scale genome alignment and comparison
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20 June 2018
Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis
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20 June 2018
Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
ARACHNE: a whole-genome shotgun assembler
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
Initial sequencing and analysis of the human genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
The Sequence of the Human Genome
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PubMed Central
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20 June 2018
A whole-genome assembly of Drosophila
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20 June 2018
The Staden package, 1998
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
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20 June 2018
Consed: a graphical tool for sequence finishing
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20 June 2018
Base-calling of automated sequencer traces using phred. II. Error probabilities
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20 June 2018
Simple tandem DNA repeats and human genetic disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
Toward simplifying and accurately formulating fragment assembly
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20 June 2018
Genomic mapping by fingerprinting random clones: a mathematical analysis
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PubMed Central
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20 June 2018
The accuracy of DNA sequences: estimating sequence quality
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
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20 June 2018
Assembly reconciliation.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
retrieved
26 November 2018
Beware of mis-assembled genomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
retrieved
26 November 2018
A tool for analyzing mate pairs in assemblies (TAMPA).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
retrieved
26 November 2018
Comparative analysis of human genome assemblies reveals genome-level differences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2397507
retrieved
26 November 2018
A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18341692
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Human genome: end of the beginning
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18341692
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Shotgun sequence assembly and recent segmental duplications within the human genome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18341692
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/GB-2008-9-3-R55
1 reference
stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
Dimensions Publication ID
1003390143
0 references
PMCID
2397507
1 reference
stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
PubMed ID
18341692
1 reference
stated in
Europe PubMed Central
PMCID
2397507
retrieved
4 September 2017
ResearchGate publication ID
5510040
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