(Q30482136)

15 August 2017

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins (English)

1 reference

15 August 2017

1 reference

3

P G Wolynes

1 reference

15 August 2017

O. Miyashita

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

22 March 2024

J. N. Onuchic

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

22 March 2024

language of work or name

English

0 references

publication date

17 October 2003

1 reference

PMCID

240658

full work available at URL

15 August 2017

https://europepmc.org/articles/pmc240658?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

https://europepmc.org/articles/PMC240658

22 March 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

https://europepmc.org/articles/PMC240658?pdf=render

22 March 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

https://doi.org/10.1073/pnas.2135471100

22 March 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14566052

https://pnas.org/doi/pdf/10.1073/pnas.2135471100

22 March 2024

1 reference

https://api.crossref.org/works/10.1073/PNAS.2135471100

Proceedings of the National Academy of Sciences of the United States of America

22 March 2024

published in

1 reference

15 August 2017

100

1 reference

15 August 2017

12570-12575

1 reference

15 August 2017

22

1 reference

Raster3D: photorealistic molecular graphics

15 August 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

20 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.2135471100

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The protein kinase complement of the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Conformational change of the actomyosin complex drives the multiple stepping movement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The linkage between protein folding and functional cooperativity: two sides of the same coin?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Kinetic and catalytic mechanisms of protein kinases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The physics of molecular motors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Conformational change of proteins arising from normal mode calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Anisotropy of fluctuation dynamics of proteins with an elastic network model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Folding funnels and conformational transitions via hinge-bending motions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

A simple model for calculating the kinetics of protein folding from three-dimensional structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Structural and energetic factors of the increased thermal stability in a genetically engineered Escherichia coli adenylate kinase.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Theory of protein folding: the energy landscape perspective

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Folding-unfolding transitions in single titin molecules characterized with laser tweezers.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Stability, activity and structure of adenylate kinase mutants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Theoretical Studies of Protein Folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Protein states and proteinquakes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Application of linear free energy relations to protein conformational changes: the quaternary structural change of hemoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Projection of Monte Carlo and molecular dynamics trajectories onto the normal mode axes: human lysozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The Energy Landscapes and Motions of Proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2135471100

Phosphorylation driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2135471100

Building-block approach for determining low-frequency normal modes of macromolecules.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=240658

The hinge-bending mode in lysozyme

26 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2135471100

Mechanism of adenylate kinase. Is there a relationship between local substrate dynamics, local binding energy, and the catalytic mechanism?

21 January 2018

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Motions in hemoglobin studied by normal mode analysis and energy minimization: evidence for the existence of tertiary T-like, quaternary R-like intermediate structures

1 reference

12 December 2020

Mechanism of adenylate kinase. Histidine-36 is not directly involved in catalysis, but protects cysteine-25 and stabilizes the tertiary structure

1 reference

12 December 2020

Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease

1 reference

12 December 2020

Statistical thermodynamics. Taking a walk on a landscape

1 reference

12 December 2020

Activation of adenylate kinase by denaturants is due to the increasing conformational flexibility at its active sites

1 reference

12 December 2020

Activation of chicken liver dihydrofolate reductase in concentrated urea solutions

1 reference

12 December 2020

1 reference

12 December 2020

A new force field for molecular mechanical simulation of nucleic acids and proteins

series ordinal

17

1 reference

https://api.crossref.org/works/10.1073/PNAS.2135471100

Electron transfers in chemistry and biology

22 March 2024

series ordinal

37

1 reference

https://api.crossref.org/works/10.1073/PNAS.2135471100

22 March 2024

Identifiers

1 reference

15 August 2017

0 references

1 reference

15 August 2017

1 reference

PMCID

240658