(Q30726969)

26 June 2017

Knowledge-based potential defined for a rotamer library to design protein sequences (English)

1 reference

26 June 2017

0 references

1 reference

Ota M

1

1 reference

PubMed ID

11579224

26 June 2017

Isogai Y

series ordinal

2

1 reference

PubMed ID

11579224

26 June 2017

Nishikawa K

series ordinal

3

1 reference

26 June 2017

1 August 2001

1 reference

Protein Engineering Design and Selection

26 June 2017

1 reference

26 June 2017

14

1 reference

26 June 2017

557-564

1 reference

26 June 2017

8

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

26 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

De novo design of native proteins: characterization of proteins intended to fold into antiparallel, rop-like, four-helix bundles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Protein design automation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

De novo protein design: fully automated sequence selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

De novo design of a monomeric three-stranded antiparallel beta-sheet

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

In search of the ideal protein sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Mapping the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

De novo protein design using pairwise potentials and a genetic algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

How to derive a protein folding potential? A new approach to an old problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Feasibility in the inverse protein folding protocol.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Desk-top analysis of the structural stability of various point mutations introduced into ribonuclease H.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Combination of threading potentials and sequence profiles improves fold recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Characterization of a helical protein designed from first principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Are database-derived potentials valid for scoring both forward and inverted protein folding?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

A new approach to the design of stable proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of hydrophobic residues to the stability of human lysozyme: calorimetric studies and X-ray structural analysis of the five isoleucine to valine mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of water molecules in the interior of a protein to the conformational stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of the hydrophobic effect to the stability of human lysozyme: calorimetric studies and X-ray structural analyses of the nine valine to alanine mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser --> Ala mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six tyrosine --> phenylalanine mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

Novel knowledge-based mean force potential at atomic level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F14.8.557

21 January 2018

Identifiers

DOI

10.1093/PROTEIN/14.8.557

1 reference

26 June 2017

1 reference

PubMed ID

11579224