(Q30838548)

12 November 2017

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data (English)

1 reference

12 November 2017

whole genome sequencing

1 reference

5

1 reference

12 November 2017

Gavin Ha

1

0 references

Jiarui Ding

12

object named as

Jiarui Ding

1 reference

12 November 2017

20

Samuel Aparicio

1 reference

12 November 2017

17

C Blake Gilks

1 reference

12 November 2017

Andrew Roth

2

1 reference

12 November 2017

Jaswinder Khattra

3

1 reference

12 November 2017

Julie Ho

4

1 reference

12 November 2017

Leah M Prentice

6

1 reference

12 November 2017

Nataliya Melnyk

7

1 reference

12 November 2017

Andrew McPherson

8

1 reference

12 November 2017

Ali Bashashati

9

1 reference

12 November 2017

Emma Laks

10

1 reference

12 November 2017

Justina Biele

11

1 reference

12 November 2017

Alan Le

13

1 reference

12 November 2017

Jamie Rosner

14

1 reference

12 November 2017

Karey Shumansky

15

1 reference

12 November 2017

Marco A Marra

16

1 reference

12 November 2017

David G Huntsman

18

1 reference

12 November 2017

Jessica N McAlpine

19

1 reference

12 November 2017

Sohrab P Shah

21

1 reference

12 November 2017

24 July 2014

1 reference

12 November 2017

1 reference

12 November 2017

24

1 reference

12 November 2017

11

1 reference

12 November 2017

1881-1893

1 reference

High-definition reconstruction of clonal composition in cancer

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

PyClone: statistical inference of clonal population structure in cancer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Single-cell mutational profiling and clonal phylogeny in cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Diverse mechanisms of somatic structural variations in human cancer genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The implications of clonal genome evolution for cancer medicine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Evolution and impact of subclonal mutations in chronic lymphocytic leukemia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Profiles of genomic instability in high-grade serous ovarian cancer predict treatment outcome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The life history of 21 breast cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Absolute quantification of somatic DNA alterations in human cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Clonal evolution in cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The DNA damage response and cancer therapy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Integrated genomic analyses of ovarian carcinoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Tumour evolution inferred by single-cell sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Allele-specific copy number analysis of tumors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

International network of cancer genome projects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Driver mutations in TP53 are ubiquitous in high grade serous carcinoma of the ovary

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

The clonal evolution of tumor cell populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216928

Reliable detection of subclonal single-nucleotide variants in tumour cell populations.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1101%2FGR.180281.114

OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1101%2FGR.180281.114

Clinicopathological features of homologous recombination-deficient epithelial ovarian cancers: sensitivity to PARP inhibitors, platinum, and survival

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25060187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.180281.114

1 reference

12 November 2017

1 reference

12 November 2017

PubMed publication ID

25060187

1 reference