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LEMming: A Linear Error Model to Normalize Parallel Quantitative Real-Time PCR (qPCR) Data as an Alternative to Reference Gene Based Methods

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Europe PubMed Central

PMC publication ID

12 November 2017

LEMming: A Linear Error Model to Normalize Parallel Quantitative Real-Time PCR (qPCR) Data as an Alternative to Reference Gene Based Methods (English)

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

1

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

7

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

Ulrich M. Zanger

6

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Ulrich M Zanger

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

Sebastian Vlaic

2

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Sebastian Vlaic

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

5

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Uta Dahmen

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

author name string

Janine Arlt

3

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Europe PubMed Central

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12 November 2017

Oliver Sawodny

4

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Europe PubMed Central

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12 November 2017

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publication date

1 September 2015

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Europe PubMed Central

PMC publication ID

12 November 2017

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

10

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Europe PubMed Central

PMC publication ID

12 November 2017

9

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

e0135852

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

copyright license

Creative Commons Attribution 4.0 International

1 September 2015

1 reference

April 2022 Public Data File from Crossref

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describes a project that uses

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limma

R package limma

2 references

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/4556681

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

A survey of tools for the analysis of quantitative PCR (qPCR) data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

DAG expression: high-throughput gene expression analysis of real-time PCR data using standard curves for relative quantification.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

No control genes required: Bayesian analysis of qRT-PCR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

SASqPCR: robust and rapid analysis of RT-qPCR data in SAS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

High throughput gene expression measurement with real time PCR in a microfluidic dynamic array

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Quantification of mRNA using real-time RT-PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Properties of the reverse transcription reaction in mRNA quantification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

A new mathematical model for relative quantification in real-time RT-PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Comparison of glyceraldehyde-3-phosphate dehydrogenase and 28S-ribosomal RNA gene expression as RNA loading controls for northern blot analysis of cell lines of varying malignant potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

14 July 2018

Keeping qRT-PCR rigorous and biologically relevant.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135852

21 January 2018

Utility of the housekeeping genes 18S rRNA, beta-actin and glyceraldehyde-3-phosphate-dehydrogenase for normalization in real-time quantitative reverse transcriptase-polymerase chain reaction analysis of gene expression in human T lymphocytes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135852

21 January 2018

Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135852

21 January 2018

Reduced hepatic arterial perfusion impairs the recovery from focal hepatic venous outflow obstruction in liver-resected rats.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4556681

25 November 2018

Up-regulation of beta-actin, cyclophilin and GAPDH in N1S1 rat hepatoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/26325269

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Liver cell proliferation after partial hepatectomy in rats with liver metastases

1 reference

https://pubmed.ncbi.nlm.nih.gov/26325269

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of proliferating cell nuclear antigen as a marker of liver regeneration after partial hepatectomy in rats

1 reference

https://pubmed.ncbi.nlm.nih.gov/26325269

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stimulation of glyceraldehyde-3-phosphate dehydrogenase mRNA levels by endogenous nitric oxide in cytokine-activated endothelium

1 reference

https://pubmed.ncbi.nlm.nih.gov/26325269

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0135852

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

2015PLoSO..1035852F

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 November 2017

ResearchGate publication ID

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