(Q31040867)

17 September 2017

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data (English)

1 reference

17 September 2017

0 references

1 reference

1 reference

Vimalkumar Velayudhan

object named as

Vimalkumar Velayudhan

3

0 references

Audrey M Michel

object named as

Audrey M Michel

1

0 references

author name string

James P A Mullan

2

1 reference

17 September 2017

Patrick B F O'Connor

4

1 reference

17 September 2017

Claire A Donohue

5

1 reference

17 September 2017

Pavel V Baranov

6

1 reference

17 September 2017

29 January 2016

1 reference

17 September 2017

1 reference

17 September 2017

13

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17 September 2017

3

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17 September 2017

316-319

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Creative Commons Attribution-NonCommercial 3.0 Unported

17 September 2017

start time

1 March 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Online resources for genomic analysis using high-throughput sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

The UCSC Genome Browser database: 2015 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Genome-wide translational changes induced by the prion [PSI+].

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Dissemination of scientific software with Galaxy ToolShed

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

GWIPS-viz: development of a ribo-seq genome browser

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

NGS analyses by visualization with Trackster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Observation of dually decoded regions of the human genome using ribosome profiling data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Molecular biology. Translation goes global.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4829337

Ribosome profiling: new views of translation, from single codons to genome scale

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F15476286.2016.1141862

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1080%2F15476286.2016.1141862

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26821742

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26821742

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1080/15476286.2016.1141862

1 reference

17 September 2017

1 reference

17 September 2017

PubMed publication ID

26821742

1 reference