(Q31118292)

20 August 2017

NanoStringDiff: a novel statistical method for differential expression analysis based on NanoString nCounter data (English)

1 reference

20 August 2017

0 references

7

Heidi Weiss

0 references

author name string

Hong Wang

1

1 reference

20 August 2017

Craig Horbinski

2

1 reference

20 August 2017

Hao Wu

3

1 reference

20 August 2017

Yinxing Liu

4

1 reference

20 August 2017

Shaoyi Sheng

5

1 reference

20 August 2017

Jinpeng Liu

6

1 reference

20 August 2017

Arnold J Stromberg

8

1 reference

20 August 2017

Chi Wang

9

1 reference

20 August 2017

language of work or name

English

0 references

publication date

28 July 2016

1 reference

20 August 2017

Nucleic Acids Research

1 reference

20 August 2017

44

1 reference

20 August 2017

e151

1 reference

20 August 2017

20

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

20 August 2017

start time

29 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

MiR-221/222 promote human glioma cell invasion and angiogenesis by targeting TIMP2.

1 reference

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MiR-374b-5p suppresses RECK expression and promotes gastric cancer cell invasion and metastasis

21 June 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

An evaluation and replication of miRNAs with disease stage and colorectal cancer-specific mortality

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Rapid neurogenesis through transcriptional activation in human stem cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Prognostic value of miR-221-3p, miR-342-3p and miR-491-5p expression in colon cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

MicroRNA expression differences in human hematopoietic cell lineages enable regulated transgene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Effect of miR-142-3p on the M2 macrophage and therapeutic efficacy against murine glioblastoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

MicroRNA profiling implies new markers of chemoresistance of triple-negative breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Hippo signaling regulates microprocessor and links cell-density-dependent miRNA biogenesis to cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Isocitrate dehydrogenase 1 (IDH1) mutation-specific microRNA signature predicts favorable prognosis in glioblastoma patients with IDH1 wild type

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

MiR-15b and miR-152 reduce glioma cell invasion and angiogenesis via NRP-2 and MMP-3

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

High level of miR-221/222 confers increased cell invasion and poor prognosis in glioma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

NanoStriDE: normalization and differential expression analysis of NanoString nCounter data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

mRNA transcript quantification in archival samples using multiplexed, color-coded probes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Differential expression analysis for sequence count data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Direct multiplexed measurement of gene expression with color-coded probe pairs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Moderated statistical tests for assessing differences in tag abundance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Nucleic Acid Modifications in Regulation of Gene Expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

The Epitranscriptome and Innate Immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

RNA editing by adenosine deaminases that act on RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

RED2, a brain-specific member of the RNA-specific adenosine deaminase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

A-to-I RNA editing and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Mutational spectrum of the ADAR1 gene in dyschromatosis symmetrica hereditaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Seven novel mutations of the ADAR gene in Chinese families and sporadic patients with dyschromatosis symmetrica hereditaria (DSH).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Predicting sites of ADAR editing in double-stranded RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

A mammalian RNA editing enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Substrate recognition by ADAR1 and ADAR2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Binding properties of newly identified Xenopus proteins containing dsRNA-binding motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

New and old roles of the double-stranded RNA-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Large-scale overexpression and purification of ADARs from Saccharomyces cerevisiae for biophysical and biochemical studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

A Phenotypic Screen for Functional Mutants of Human Adenosine Deaminase Acting on RNA 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

RNA-Seq analysis identifies a novel set of editing substrates for human ADAR2 present in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Mechanistic insights into editing-site specificity of ADARs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Matching active site and substrate structures for an RNA editing reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Green fluorescent protein as a reporter of transcription and protein localization in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Screening of stable G-protein-coupled receptor variants in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Recognition of duplex RNA by the deaminase domain of the RNA editing enzyme ADAR2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

High-throughput mutagenesis reveals functional determinants for DNA targeting by activation-induced deaminase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

To edit or not to edit: regulation of ADAR editing specificity and efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Pin1 and WWP2 regulate GluR2 Q/R site RNA editing by ADAR2 with opposing effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Structural Requirements for RNA Editing in Glutamate Receptor Pre-mRNAs by Recombinant Double-stranded RNA Adenosine Deaminase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW799

Knockdown of long non-coding RNA XIST exerts tumor-suppressive functions in human glioblastoma stem cells by up-regulating miR-152.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

MiR-152 functions as a tumor suppressor in glioblastoma stem cells by targeting Krüppel-like factor 4.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Hsa-miR-181a-5p expression and effects on cell proliferation in gastric cancer

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5175344

Screening miRNAs related to different subtypes of breast cancer with miRNAs microarray

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27471031

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW799

1 reference

20 August 2017

1 reference

20 August 2017

1 reference