(Q33265217)

24 July 2017

Transcriptional regulation by competing transcription factor modules (English)

1 reference

24 July 2017

Rutger Hermsen

1

0 references

author name string

Sander Tans

series ordinal

2

1 reference

PubMed ID

17140283

24 July 2017

Pieter Rein ten Wolde

series ordinal

3

1 reference

24 July 2017

23 October 2006

1 reference

PLOS Computational Biology

24 July 2017

1 reference

24 July 2017

2

1 reference

24 July 2017

e164

1 reference

24 July 2017

12

1 reference

Creative Commons Attribution 4.0 International

24 July 2017

start time

1 January 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Transcriptional regulation by the numbers: applications

21 June 2018

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Transcriptional regulation by the numbers: models.

21 June 2018

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Logic functions of the genomic cis-regulatory code

21 June 2018

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Interaction network containing conserved and essential protein complexes in Escherichia coli

21 June 2018

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21 June 2018

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Adaptive evolution of transcription factor binding sites

21 June 2018

1 reference

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Design of genetic networks with specified functions by evolution in silico.

21 June 2018

1 reference

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A biophysical approach to transcription factor binding site discovery

21 June 2018

1 reference

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Genetic regulatory mechanisms in the synthesis of proteins

21 June 2018

2 references

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21 June 2018

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On schemes of combinatorial transcription logic

31 October 2018

1 reference

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Directed evolution of a genetic circuit

21 June 2018

1 reference

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Physical constraints and functional characteristics of transcription factor-DNA interaction.

21 June 2018

1 reference

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Network motifs in the transcriptional regulation network of Escherichia coli

21 June 2018

1 reference

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Thermodynamics of E. coli cytidine repressor interactions with DNA: distinct modes of binding to different operators suggests a role in differential gene regulation

21 June 2018

1 reference

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A simple mechanism for co-dependence on two activators at an Escherichia coli promoter

21 June 2018

1 reference

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Repression of deoP2 in Escherichia coli by CytR: conversion of a transcription activator into a repressor

21 June 2018

1 reference

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Mechanisms of transcriptional repression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Synergistic transcription activation: a dual role for CRP in the activation of an Escherichia coli promoter depending on MalT and CRP

21 June 2018

1 reference

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The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

21 June 2018

1 reference

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Studies of the Escherichia coli Trp repressor binding to its five operators and to variant operator sequences.

21 June 2018

1 reference

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Some repressors of bacterial transcription

21 June 2018

1 reference

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Specificity, free energy and information content in protein-DNA interactions

21 June 2018

1 reference

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Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

21 June 2018

1 reference

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Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Role of multiple ArcA recognition sites in anaerobic regulation of succinate dehydrogenase (sdhCDAB) gene expression in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Quantitative specificity of the Mnt repressor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: characterization of DNA binding at target promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Analysis of CRP-CytR interactions at the Escherichia coli udp promoter

21 June 2018

1 reference

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Compilation of E. coli mRNA promoter sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Molecular biology of the LysR family of transcriptional regulators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Promoter structure, promoter recognition, and transcription activation in prokaryotes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Functional analysis of the Escherichia coli K-12 cyn operon transcriptional regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

CRP induces the repositioning of MalT at the Escherichia coli malKp promoter primarily through DNA bending

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by Crp.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

DNA binding sites of the LysR-type regulator GcvA in the gcv and gcvA control regions of Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

The cyclic AMP (cAMP)-cAMP receptor protein complex functions both as an activator and as a corepressor at the tsx-p2 promoter of Escherichia coli K-12

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

LRP and H-NS--cooperative partners for transcription regulation at Escherichia coli rRNA promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Functional determinants of transcription factors in Escherichia coli: protein families and binding sites.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

On the selection and evolution of regulatory DNA motifs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Occlusion of RNA polymerase by oligomerization of DnaA protein over the dnaA promoter of Escherichia coli.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Evidence of an Unusually Long Operator for the Fur Repressor in the Aerobactin Promoter ofEscherichia coli

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1676028

Dissection of a surface-exposed portion of the cAMP-CRP complex that mediates transcription activation and repression

10 December 2018

1 reference

12 December 2020

Gene-regulatory modules in Escherichia coli: nucleoprotein complexes formed by cAMP-CRP and CytR at the nupG promoter

1 reference

12 December 2020

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

1 reference

12 December 2020

Selection of DNA binding sites by regulatory proteins. Functional specificity and pseudosite competition

1 reference

12 December 2020

Lrp, a global regulatory protein of Escherichia coli, binds co-operatively to multiple sites and activates transcription of ilvIH

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.0020164

Identifiers

DOI

1 reference

journals/ploscb/HermsenTW06

24 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

24 July 2017

1 reference

PubMed ID

17140283