(Q33332621)

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Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments

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Europe PubMed Central

PubMed publication ID

25 July 2017

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments (English)

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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marine sediment

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based on heuristic

inferred from title

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based on heuristic

inferred from title

3

object named as

Sung-Keun Rhee

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

author name string

Soo-Je Park

1

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Europe PubMed Central

PubMed publication ID

25 July 2017

Byoung-Joon Park

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

publication date

9 May 2008

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Europe PubMed Central

PubMed publication ID

25 July 2017

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Europe PubMed Central

PubMed publication ID

25 July 2017

12

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Europe PubMed Central

PubMed publication ID

25 July 2017

4

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Europe PubMed Central

PubMed publication ID

25 July 2017

605-615

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Europe PubMed Central

PubMed publication ID

25 July 2017

A cold-loving crenarchaeon is a substantial part of a novel microbial community in cold sulphidic marsh water

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https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Archaea in coastal marine environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

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Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Molecular phylogeny of Archaea from soil.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Prokaryotes: the unseen majority

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

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12 December 2020

based on heuristic

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Microfluidic digital PCR enables multigene analysis of individual environmental bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

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Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity and distribution of methanotrophic archaea at cold seeps

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Archaeal diversity in waters from deep South African gold mines

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic studies of uncultivated archaea

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of an autotrophic ammonia-oxidizing marine archaeon

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Archaeal nitrification in the ocean

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crenarchaeota and Euryarchaeota in temperate estuarine sediments.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Primary succession of soil Crenarchaeota across a receding glacier foreland

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Abundance and diversity of Archaea in heavy-metal-contaminated soils

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel major archaebacterial group from marine plankton

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crenarchaeota in Lake Michigan sediment

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microbial Diversity in Sediments Collected from the Deepest Cold-Seep Area, the Japan Trench

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Environmental genome shotgun sequencing of the Sargasso Sea

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Wide diversity of Crenarchaeota.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Counting the uncountable: statistical approaches to estimating microbial diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Peculiar Archaea Found in Japanese Paddy Soils†

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Archaea predominate among ammonia-oxidizing prokaryotes in soils

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel group within the kingdom Crenarchaeota from boreal forest soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/18465082

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00792-008-0165-7

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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