(Q33366448)

26 July 2017

title

Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression (English)

1 reference

26 July 2017

André Boorsma

1

1 reference

26 July 2017

Xiang-Jun Lu

2

1 reference

26 July 2017

Anna Zakrzewska

3

1 reference

26 July 2017

Frans M Klis

4

1 reference

26 July 2017

Harmen J Bussemaker

5

1 reference

26 July 2017

language of work or name

English

0 references

publication date

3 September 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

3

1 reference

26 July 2017

issue

9

1 reference

26 July 2017

page(s)

e3112

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

copyright license

start time

3 September 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Characterization of the transcriptional response to cell wall stress in Saccharomyces cerevisiae.

21 June 2018

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21 June 2018

1 reference

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21 June 2018

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21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

21 June 2018

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21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

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21 June 2018

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21 June 2018

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

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21 June 2018

1 reference

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Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Yeast calcineurin regulates nuclear localization of the Crz1p transcription factor through dephosphorylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Expression monitoring by hybridization to high-density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Signalling from endoplasmic reticulum to nucleus: transcription factor with a basic-leucine zipper motif is required for the unfolded protein-response pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518834

Identification and distinct regulation of yeast TATA box-containing genes

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

Predicting gene expression from sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

A basal transcription factor that activates or represses transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

Selective retention of secretory proteins in the yeast endoplasmic reticulum by treatment of cells with a reducing agent

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003112

YAP4 gene expression is induced in response to several forms of stress in Saccharomyces cerevisiae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18769540

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A web site for the computational analysis of yeast regulatory sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18769540

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0003112

1 reference

26 July 2017

0 references

1 reference

26 July 2017

1 reference