(Q33394591)

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Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species

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scholarly article

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Europe PubMed Central

26 July 2017

Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species (English)

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Europe PubMed Central

26 July 2017

high-throughput sequencing

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based on heuristic

inferred from title

Kasper D. Hansen

2

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Europe PubMed Central

26 July 2017

5

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Europe PubMed Central

26 July 2017

Sandrine Dudoit

4

object named as

Sandrine Dudoit

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Europe PubMed Central

26 July 2017

author name string

Albert Lee

1

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Europe PubMed Central

26 July 2017

James Bullard

3

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Europe PubMed Central

26 July 2017

publication date

19 December 2008

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Europe PubMed Central

26 July 2017

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Europe PubMed Central

26 July 2017

4

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Europe PubMed Central

26 July 2017

e1000299

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Europe PubMed Central

26 July 2017

12

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Europe PubMed Central

26 July 2017

copyright license

Creative Commons Attribution 4.0 International

19 December 2008

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April 2022 Public Data File from Crossref

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describes a project that uses

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MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition

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1 reference

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1 reference

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1 reference

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Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae

1 reference

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14 July 2018

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome

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1 reference

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Trf4 and Trf5 proteins of Saccharomyces cerevisiae exhibit poly(A) RNA polymerase activity but no DNA polymerase activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Vector-capping: a simple method for preparing a high-quality full-length cDNA library

1 reference

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Accurate multiplex polony sequencing of an evolved bacterial genome

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1 reference

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14 July 2018

Toward the 1,000 dollars human genome.

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14 July 2018

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

1 reference

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14 July 2018

Rfam: annotating non-coding RNAs in complete genomes

1 reference

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14 July 2018

Global identification of human transcribed sequences with genome tiling arrays

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Bioconductor: open software development for computational biology and bioinformatics

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A comprehensive transcript index of the human genome generated using microarrays and computational approaches

1 reference

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14 July 2018

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Versatile and open software for comparing large genomes

1 reference

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14 July 2018

Empirical analysis of transcriptional activity in the Arabidopsis genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

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1 reference

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Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin

1 reference

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14 July 2018

Sequencing and comparison of yeast species to identify genes and regulatory elements

1 reference

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14 July 2018

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1 reference

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14 July 2018

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1 reference

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14 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Quality control of mRNA 3'-end processing is linked to the nuclear exosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

The yeast cytoplasmic LsmI/Pat1p complex protects mRNA 3' termini from partial degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Identification of a regulated pathway for nuclear pre-mRNA turnover.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Yeast Sm-like proteins function in mRNA decapping and decay

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Origin and properties of non-coding ORFs in the yeast genome.

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Isolation and characterization of Dcp1p, the yeast mRNA decapping enzyme

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Life with 6000 genes

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The yeast genome project: what did we learn?

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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An essential component of the decapping enzyme required for normal rates of mRNA turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

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Yeast cells lacking 5'-->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2601015

14 July 2018

Turnover mechanisms of the stable yeast PGK1 mRNA

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Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

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Analysis of distribution of bases in the coding sequences by a diagrammatic technique

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14 July 2018

An integrated approach for finding overlooked genes in yeast.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method

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21 January 2018

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

CUTting genetic noise by polyadenylation-induced RNA degradation

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Transcript mapping with high-density oligonucleotide tiling arrays.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Asymmetry of Coding Versus Noncoding Strand in Coding Sequences of Different Genomes

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

How many protein-coding genes are there in theSaccharomyces cerevisiae genome?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000299

21 January 2018

Genome-wide transcription analyses in rice using tiling microarrays

1 reference

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21 January 2018

Identifiers

10.1371/JOURNAL.PGEN.1000299

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

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