(Q33778543)

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A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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based on heuristic

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Schmidtea mediterranea

object named as

Schmidtea mediterranea

1 reference

based on heuristic

inferred from title

Aziz A. Aboobaker

11

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

Martin J Blythe

1

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18 January 2020

Damian Kao

2

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18 January 2020

Sunir Malla

3

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18 January 2020

Joanna Rowsell

4

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18 January 2020

Ray Wilson

5

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18 January 2020

Deborah Evans

6

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18 January 2020

Jamie Jowett

7

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18 January 2020

Amy Hall

8

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18 January 2020

Virginie Lemay

9

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18 January 2020

Sabrina Lam

10

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18 January 2020

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14 December 2010

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18 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

5

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18 January 2020

12

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18 January 2020

e15617

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Europe PubMed Central

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18 January 2020

copyright license

Creative Commons Attribution 4.0 International

14 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Planarian regeneration involves distinct stem cell responses to wounds and tissue absence

1 reference

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4 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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4 July 2018

The TALE class homeobox gene Smed-prep defines the anterior compartment for head regeneration

1 reference

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4 July 2018

Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome.

1 reference

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Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

1 reference

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Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

1 reference

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4 July 2018

The Mi-2-like Smed-CHD4 gene is required for stem cell differentiation in the planarian Schmidtea mediterranea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

Gradients in planarian regeneration and homeostasis

1 reference

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4 July 2018

A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

Planarian Hedgehog/Patched establishes anterior-posterior polarity by regulating Wnt signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

The Pfam protein families database

1 reference

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4 July 2018

A wound-induced Wnt expression program controls planarian regeneration polarity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

De novo transcriptome assembly with ABySS.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

Spoltud-1 is a chromatoid body component required for planarian long-term stem cell self-renewal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

mRNA-Seq whole-transcriptome analysis of a single cell

1 reference

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4 July 2018

Phylogenomics revives traditional views on deep animal relationships

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4 July 2018

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

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4 July 2018

The GOA database in 2009--an integrated Gene Ontology Annotation resource

1 reference

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4 July 2018

Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea

1 reference

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4 July 2018

A protein domain-based interactome network for C. elegans early embryogenesis

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4 July 2018

Comparative aspects of animal regeneration

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4 July 2018

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4 July 2018

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4 July 2018

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1 reference

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4 July 2018

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

The impact of next-generation sequencing technology on genetics

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Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis

1 reference

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

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4 July 2018

SmedGD: the Schmidtea mediterranea genome database

1 reference

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nanos function is essential for development and regeneration of planarian germ cells.

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1 reference

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4 July 2018

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1 reference

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1 reference

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4 July 2018

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4 July 2018

Fundamentals of planarian regeneration

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4 July 2018

Differential expression in SAGE: accounting for normal between-library variation.

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4 July 2018

Not your father's planarian: a classic model enters the era of functional genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001875

4 July 2018

An MCM2-related gene is expressed in proliferating cells of intact and regenerating planarians

1 reference

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CAP3: A DNA sequence assembly program

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1 reference

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4 July 2018

Smed-Evi/Wntless is required for beta-catenin-dependent and -independent processes during planarian regeneration.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

Silencing of Smed-betacatenin1 generates radial-like hypercephalized planarians.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

The BMP pathway is essential for re-specification and maintenance of the dorsoventral axis in regenerating and intact planarians.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

Wnt signaling is required for antero-posterior patterning of the planarian brain

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

smedinx-11 is a planarian stem cell gap junction gene required for regeneration and homeostasis.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

A Bruno-like gene is required for stem cell maintenance in planarians

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

Distribution of the stem cells (neoblasts) in the planarian Dugesia japonica.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015617

21 January 2018

Changes in the regenerative capacity of irradiated planarians (Dugesia subtentaculata) as a function of the x-ray dose

1 reference

https://pubmed.ncbi.nlm.nih.gov/21179477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration

1 reference

https://pubmed.ncbi.nlm.nih.gov/21179477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Smed-SmB, a member of the LSm protein superfamily, is essential for chromatoid body organization and planarian stem cell proliferation

1 reference

https://pubmed.ncbi.nlm.nih.gov/21179477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BMP signaling regulates the dorsal planarian midline and is needed for asymmetric regeneration

1 reference

https://pubmed.ncbi.nlm.nih.gov/21179477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0015617

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

2010PLoSO...515617B

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179477%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

ResearchGate publication ID

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