(Q33949034)

30 July 2017

Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations (English)

1 reference

30 July 2017

L Li

1

1 reference

PubMed ID

11606790

30 July 2017

E I Shakhnovich

series ordinal

2

1 reference

PubMed ID

11606790

30 July 2017

language of work or name

English

0 references

publication date

23 October 2001

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

98

1 reference

30 July 2017

13014-13018

1 reference

30 July 2017

23

1 reference

Multiple protein folding nuclei and the transition state ensemble in two-state proteins

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Thermodynamics of protein folding: a statistical mechanical study of a small all-beta protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

A simple model for calculating the kinetics of protein folding from three-dimensional structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Obligatory steps in protein folding and the conformational diversity of the transition state

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Direct observation of better hydration at the N terminus of an alpha-helix with glycine rather than alanine as the N-cap residue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Effect of cavity-creating mutations in the hydrophobic core of chymotrypsin inhibitor 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Mapping the transition state and pathway of protein folding by protein engineering

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Critical role of beta-hairpin formation in protein G folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Three key residues form a critical contact network in a protein folding transition state

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Computer-based redesign of a protein folding pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Interpreting the folding kinetics of helical proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=60816

Strain in the folding nucleus of chymotrypsin inhibitor 2

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Differential stabilization of two hydrophobic cores in the transition state of the villin 14T folding reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Phi-values for BPTI folding intermediates and implications for transition state analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

Native topology or specific interactions: what is more important for protein folding?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.241378398

21 January 2018

Identifiers

DOI

10.1073/PNAS.241378398

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

11606790