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Mathematical modeling of gene networks
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scholarly article
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stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
review article
1 reference
stated in
Europe PubMed Central
title
Mathematical modeling of gene networks
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
author name string
Smolen P
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
Baxter DA
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
Byrne JH
series ordinal
3
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
language of work or name
English
0 references
publication date
1 June 2000
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
published in
Neuron
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
volume
26
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
page(s)
567-580
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
issue
3
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
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dCLOCK is present in limiting amounts and likely mediates daily interactions between the dCLOCK-CYC transcription factor and the PER-TIM complex
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CREB1 encodes a nuclear activator, a repressor, and a cytoplasmic modulator that form a regulatory unit critical for long-term facilitation
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Aplysia CREB2 represses long-term facilitation: relief of repression converts transient facilitation into long-term functional and structural change
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Characterization and phosphorylation of CREB-like proteins in Aplysia central nervous system
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Injection of the cAMP-responsive element into the nucleus of Aplysia sensory neurons blocks long-term facilitation
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Cluster analysis and display of genome-wide expression patterns
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Visualization of single RNA transcripts in situ
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CREB: a major mediator of neuronal neurotrophin responses.
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Context-dependent transcriptional regulation
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A third component causing random variability beside environment and genotype. A reason for the limited success of a 30 year long effort to standardize laboratory animals?
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DNA chips: promising toys have become powerful tools
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Exact stochastic simulation of coupled chemical reactions
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The logical analysis of continuous, non-linear biochemical control networks
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Impaired experience-dependent plasticity in barrel cortex of mice lacking the alpha and delta isoforms of CREB.
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Interlocked Feedback Loops Within the Drosophila Circadian Oscillator
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A model for circadian oscillations in the Drosophila period protein (PER).
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Mathematics of cellular control processes I. Negative feedback to one gene
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Mathematics of cellular control processes II. Positive feedback to one gene
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Antisense oligodeoxynucleotide-mediated disruption of hippocampal cAMP response element binding protein levels impairs consolidation of memory for water maze training
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Noise-based switches and amplifiers for gene expression
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Altering the level and regulation of the major sigma subunit of RNA polymerase affects gene expression and development in Bacillus subtilis
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A composite Ets/Pit-1 binding site in the prolactin gene can mediate transcriptional responses to multiple signal transduction pathways
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Ultrasensitivity in the mitogen-activated protein kinase cascade
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Crosstalk between the thyroid hormone and peroxisome proliferator-activated receptors in regulating peroxisome proliferator-responsive genes.
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7 January 2021
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Regulated expression of the neural cell adhesion molecule L1 by specific patterns of neural impulses
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7 January 2021
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Signal transduction from the cell surface to the nucleus through the phosphorylation of transcription factors
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7 January 2021
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Specifying epigenetic states with autoregulatory transcription factors
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7 January 2021
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Model genetic circuits encoding autoregulatory transcription factors.
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7 January 2021
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Accurate reading of morphogen concentrations by nuclear receptors: a formal model of complex transduction pathways
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A model for reading morphogenetic gradients: autocatalysis and competition at the gene level
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7 January 2021
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Molecular insights into mRNA transport and local translation in the mammalian nervous system
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7 January 2021
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Properties of learning curve under varied distributions of practice.
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Molecular basis for cytoplasmic localization
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The role of the leucine zipper in the fos-jun interaction
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cAMP response element-binding protein in the amygdala is required for long- but not short-term conditioned taste aversion memory
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7 January 2021
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Multistability: a major means of differentiation and evolution in biological systems
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7 January 2021
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The Drosophila CLOCK protein undergoes daily rhythms in abundance, phosphorylation, and interactions with the PER-TIM complex.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Nuclear localization is required for function of the essential clock protein FRQ.
1 reference
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7 January 2021
based on heuristic
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Oscillations in a model of repression with external control
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7 January 2021
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A combined algorithm for genome-wide prediction of protein function
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7 January 2021
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MAP kinase translocates into the nucleus of the presynaptic cell and is required for long-term facilitation in Aplysia.
1 reference
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7 January 2021
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Genetic approaches to memory storage
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7 January 2021
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Stochastic mechanisms in gene expression
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7 January 2021
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It's a noisy business! Genetic regulation at the nanomolar scale
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7 January 2021
based on heuristic
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Circuit simulation of genetic networks.
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7 January 2021
based on heuristic
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Dissection of a circadian oscillation into discrete domains
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7 January 2021
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The promoter of the gene encoding 3',5'-cyclic adenosine monophosphate (cAMP) response element binding protein contains cAMP response elements: evidence for positive autoregulation of gene transcription
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7 January 2021
based on heuristic
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Inducibility and negative autoregulation of CREM: an alternative promoter directs the expression of ICER, an early response repressor.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Long-term structural remodeling in Aplysia sensory neurons requires de novo protein synthesis during a critical time period
1 reference
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7 January 2021
based on heuristic
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A clockwork explosion!
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7 January 2021
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Molecular circadian oscillators: an alternative hypothesis
1 reference
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7 January 2021
based on heuristic
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Transcription of individual genes in eukaryotic cells occurs randomly and infrequently
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7 January 2021
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Recent progress in biomolecular engineering
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7 January 2021
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Axonal transport of tubulin in Ti1 pioneer neurons in situ
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7 January 2021
based on heuristic
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Transcription factors responsive to cAMP
1 reference
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7 January 2021
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Transcriptional autoregulation of the proto-oncogene fos.
1 reference
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reference URL
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7 January 2021
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A mathematical model for the intracellular circadian rhythm generator.
1 reference
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7 January 2021
based on heuristic
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Multiple protein factors interact with the cis-regulatory elements of the proximal promoter in a cell-specific manner and regulate transcription of the dopamine beta-hydroxylase gene.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Specific regulation of immediate early genes by patterned neuronal activity
1 reference
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7 January 2021
based on heuristic
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Oscillations and multiple steady states in a cyclic gene model with repression.
1 reference
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7 January 2021
based on heuristic
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Frequency selectivity, multistability, and oscillations emerge from models of genetic regulatory systems.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
based on heuristic
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Effects of macromolecular transport and stochastic fluctuations on dynamics of genetic regulatory systems
1 reference
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reference URL
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7 January 2021
based on heuristic
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Modeling transcriptional control in gene networks--methods, recent results, and future directions
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Positive autoregulation of the myogenic determination gene MyoD1.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
based on heuristic
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The role of feedback circuits: Positive feedback circuits are a necessary condition for positive real eigenvalues of the Jacobian matrix
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Dynamical behaviour of biological regulatory networks--I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
based on heuristic
inferred from DOI database lookup
Genetic dissection of consolidated memory in Drosophila.
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
based on heuristic
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Expression of the gene encoding transcription factor cyclic adenosine 3',5'-monophosphate (cAMP) response element-binding protein (CREB): regulation by follicle-stimulating hormone-induced cAMP signaling in primary rat Sertoli cells
1 reference
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7 January 2021
based on heuristic
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Large-scale temporal gene expression mapping of central nervous system development
1 reference
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7 January 2021
based on heuristic
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Microarray analysis of Drosophila development during metamorphosis.
1 reference
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7 January 2021
based on heuristic
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Direct allelic variation scanning of the yeast genome.
1 reference
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7 January 2021
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On the relationship between genomic regulatory element organization and gene regulatory dynamics.
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7 January 2021
based on heuristic
inferred from DOI database lookup
CREB and the formation of long-term memory
1 reference
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7 January 2021
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CREB as a memory modulator: induced expression of a dCREB2 activator isoform enhances long-term memory in Drosophila
1 reference
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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
retrieved
7 January 2021
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The molecular control of circadian behavioral rhythms and their entrainment in Drosophila.
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https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene
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7 January 2021
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Quantitation of transcription and clonal selection of single living cells with beta-lactamase as reporter
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reference URL
https://api.crossref.org/works/10.1016%2FS0896-6273%2800%2981194-0
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7 January 2021
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Identifiers
DOI
10.1016/S0896-6273(00)81194-0
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
PubMed ID
10896154
1 reference
stated in
Europe PubMed Central
PubMed ID
10896154
retrieved
30 July 2017
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