(Q33986277)

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Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization

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Europe PubMed Central

PubMed publication ID

30 July 2017

Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization (English)

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Europe PubMed Central

PubMed publication ID

30 July 2017

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E F DeLong

1

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

L T Taylor

2

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Europe PubMed Central

PubMed publication ID

30 July 2017

T L Marsh

3

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Europe PubMed Central

PubMed publication ID

30 July 2017

C M Preston

4

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Europe PubMed Central

PubMed publication ID

30 July 2017

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publication date

1 December 1999

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Europe PubMed Central

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30 July 2017

Applied and Environmental Microbiology

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Europe PubMed Central

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30 July 2017

65

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Europe PubMed Central

PubMed publication ID

30 July 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

5554-5563

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Determination of Active Marine Bacterioplankton: a Comparison of Universal 16S rRNA Probes, Autoradiography, and Nucleoid Staining

1 reference

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Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization.

1 reference

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28 July 2018

Total counts of marine bacteria include a large fraction of non-nucleoid-containing bacteria (ghosts).

1 reference

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28 July 2018

Identification of Whole Fixed Bacterial Cells with Nonradioactive 23S rRNA-Targeted Polynucleotide Probes.

1 reference

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28 July 2018

Estimating the growth rate of slowly growing marine bacteria from RNA content

1 reference

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ARB: a software environment for sequence data

1 reference

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Counting and size classification of active soil bacteria by fluorescence in situ hybridization with an rRNA oligonucleotide probe.

1 reference

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Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ

1 reference

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Combination of fluorescent in situ hybridization and microautoradiography-a new tool for structure-function analyses in microbial ecology.

1 reference

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28 July 2018

Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake

1 reference

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28 July 2018

Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum

1 reference

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28 July 2018

Microbial Community Composition of Wadden Sea Sediments as Revealed by Fluorescence In Situ Hybridization.

1 reference

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28 July 2018

Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica

1 reference

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28 July 2018

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1 reference

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28 July 2018

Phylogenetic analysis and in situ identification of bacteria in activated sludge

1 reference

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28 July 2018

Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes.

1 reference

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28 July 2018

Development and field application of a quantitative method for examining natural assemblages of protists with oligonucleotide probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Application of rRNA-based probes for observing marine nanoplanktonic protists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

High abundance of Archaea in Antarctic marine picoplankton

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Characterization of chemoautotrophic bacterial symbionts in a gutless marine worm Oligochaeta, Annelida) by phylogenetic 16S rRNA sequence analysis and in situ hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Optimizing fluorescent in situ hybridization with rRNA‐targeted oligonucleotide probes for flow cytometric identification of microorganisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

In situ analysis of microbial consortia in activated sludge using fluorescently labelled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Distribution of sulfate-reducing bacteria, O2, and H2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Flow cytometric detection of ribosomal RNA in suspended cells by fluorescent in situ hybridization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells

1 reference

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28 July 2018

Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides

1 reference

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28 July 2018

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28 July 2018

Identification in situ and phylogeny of uncultured bacterial endosymbionts

1 reference

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28 July 2018

The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont

1 reference

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28 July 2018

Identification of sulphate-reducing ectosymbiotic bacteria from anaerobic ciliates using 16S rRNA binding oligonucleotide probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Dual staining of natural bacterioplankton with 4',6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Use of nuclepore filters for counting bacteria by fluorescence microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

28 July 2018

Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

1 reference

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29 October 2018

Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

29 October 2018

Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes.

1 reference

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1 reference

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29 October 2018

Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry

1 reference

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29 October 2018

Phylogenetic analysis of a highly specific association between ectosymbiotic, sulfur-oxidizing bacteria and a marine nematode

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=91757

29 October 2018

Differential sensitivity of 16S rRNA targeted oligonucleotide probes used for fluorescence in situ hybridization is a result of ribosomal higher order structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/10584017

12 December 2020

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Identifiers

10.1128/AEM.65.12.5554-5563.1999

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

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