(Q33988306)

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Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys

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scholarly article

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Europe PubMed Central

30 July 2017

Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys (English)

1 reference

Europe PubMed Central

30 July 2017

1 reference

based on heuristic

inferred from title

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M Wagner

6

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author name string

U Purkhold

1

1 reference

Europe PubMed Central

30 July 2017

A Pommerening-Röser

2

1 reference

Europe PubMed Central

30 July 2017

S Juretschko

3

1 reference

Europe PubMed Central

30 July 2017

M C Schmid

4

1 reference

Europe PubMed Central

30 July 2017

H P Koops

5

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Europe PubMed Central

30 July 2017

language of work or name

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publication date

1 December 2000

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Europe PubMed Central

30 July 2017

Applied and Environmental Microbiology

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Europe PubMed Central

30 July 2017

66

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Europe PubMed Central

30 July 2017

5368-5382

1 reference

Europe PubMed Central

30 July 2017

12

1 reference

Europe PubMed Central

30 July 2017

Contributions of Autotrophic and Heterotrophic Nitrifiers to Soil NO and N(2)O Emissions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Nitrosovibrio spp., the Dominant Ammonia-Oxidizing Bacteria in Building Sandstone.

1 reference

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5 July 2018

Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation.

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane

1 reference

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5 July 2018

Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Phylogenetic differentiation of two closely related Nitrosomonas spp. That inhabit different sediment environments in an oligotrophic freshwater lake

1 reference

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On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge

1 reference

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5 July 2018

Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the beta subdivision of the class proteobacteria in arable soils to nitrogen fertilizer

1 reference

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5 July 2018

Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake

1 reference

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Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase

1 reference

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Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials.

1 reference

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5 July 2018

Nitrogen cycling and community structure of proteobacterial beta-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments

1 reference

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5 July 2018

Effect of toxic metals on indigenous soil beta-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria

1 reference

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5 July 2018

Assessment of changes in microbial community structure during operation of an ammonia biofilter with molecular tools.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity

1 reference

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5 July 2018

Bias in template-to-product ratios in multitemplate PCR

1 reference

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5 July 2018

Effects of pH and oxygen and ammonium concentrations on the community structure of nitrifying bacteria from wastewater

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

A qualitative evaluation of the published oligonucleotides specific for the 16S rRNA gene sequences of the ammonia-oxidizing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Recovery of a Nitrosomonas-like 16S rDNA sequence group from freshwater habitats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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The oligonucleotide probe database

1 reference

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5 July 2018

Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

1 reference

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Amplification of the amoA gene from diverse species of ammonium-oxidizing bacteria and from an indigenous bacterial population from seawater.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related

1 reference

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Sequence of an ammonia monooxygenase subunit A-encoding gene from Nitrosospira sp. NpAV.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Comparison of the morphology and deoxyribonucleic acid composition of 27 strains of nitrifying bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Deoxyribonucleic acid homologies among 96 strains of ammonia-oxidizing bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Differential amplification of rRNA genes by polymerase chain reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

5 July 2018

Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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DNA sequencing with chain-terminating inhibitors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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Isolation of a moderate halophilic ammonia-oxidizing bacterium, Nitrosococcus mobilis nov. sp

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An evaluated improvement of the extinction dilution method for isolation of ammonia-oxidizing bacteria.

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29 October 2018

The amo operon in marine, ammonia-oxidizing gamma-proteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: a phylogenetic approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

Phylogenetic Diversity of Natural Populations of Ammonia Oxidizers Investigated by Specific PCR Amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

Comparative analysis of gene sequences encoding ammonia monooxygenase of Nitrosospira sp. AHB1 and Nitrosolobus multiformis C-71.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidizing bacteria demonstrates the ubiquity of nitrosospiras in the environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

The ribosomal database project.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

29 October 2018

The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92470

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1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitrification and denitrification: Probing the nitrogen cycle in aquatic environments

1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial phylogeny based on comparative sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Seasonal toxicity of ammonia to five fish and nine invertebrate species

1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic relationships of activated sludge isolates of ammonia oxidizers with different sensitivities to ammonium sulfate

1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular analysis of enrichment cultures of marine ammonia oxidisers

1 reference

https://pubmed.ncbi.nlm.nih.gov/11097916

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.66.12.5368-5382.2000

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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