(Q34007972)

30 July 2017

Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping (English)

1 reference

genome-wide association study

30 July 2017

0 references

Arabidopsis thaliana

0 references

author name string

Eva K F Chan

series ordinal

1

1 reference

30 July 2017

Heather C Rowe

series ordinal

2

1 reference

30 July 2017

Daniel J Kliebenstein

series ordinal

3

1 reference

30 July 2017

language of work or name

English

0 references

publication date

7 September 2009

1 reference

30 July 2017

17

1 reference

inferred from page(s)

published in

Genetics

1 reference

30 July 2017

185

1 reference

30 July 2017

991-1007

1 reference

30 July 2017

3

1 reference

describes a project that uses

30 July 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2907214/fullTextXML

inferred from PubMed Central ID database lookup

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5 July 2018

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Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation.

5 July 2018

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A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense

5 July 2018

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5 July 2018

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Genetic networks controlling structural outcome of glucosinolate activation across development

5 July 2018

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A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis,.

5 July 2018

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Complex genetics control natural variation in Arabidopsis thaliana resistance to Botrytis cinerea

5 July 2018

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Costs of resistance to natural enemies in field populations of the annual plant Arabidopsis thaliana

5 July 2018

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High-resolution mapping of gene expression using association in an outbred mouse stock

5 July 2018

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The glutathione-deficient mutant pad2-1 accumulates lower amounts of glucosinolates and is more susceptible to the insect herbivore Spodoptera littoralis

5 July 2018

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Efficient control of population structure in model organism association mapping

5 July 2018

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Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays

5 July 2018

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Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light

5 July 2018

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Low levels of polymorphism in genes that control the activation of defense response in Arabidopsis thaliana

5 July 2018

1 reference

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Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification

5 July 2018

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Indole-3-acetonitrile production from indole glucosinolates deters oviposition by Pieris rapae

5 July 2018

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A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates

5 July 2018

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Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways

5 July 2018

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Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Recombination and linkage disequilibrium in Arabidopsis thaliana.

5 July 2018

1 reference

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

5 July 2018

1 reference

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Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana

5 July 2018

1 reference

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Mapping of QTL for resistance against the crucifer specialist herbivore Pieris brassicae in a new Arabidopsis inbred line population, Da(1)-12 x Ei-2

5 July 2018

1 reference

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Genome-wide association study identifies novel breast cancer susceptibility loci

5 July 2018

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The R2R3-MYB transcription factor HAG1/MYB28 is a regulator of methionine-derived glucosinolate biosynthesis in Arabidopsis thaliana

5 July 2018

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The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana

5 July 2018

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Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis

5 July 2018

1 reference

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An Arabidopsis example of association mapping in structured samples

5 July 2018

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Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.

5 July 2018

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Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis

5 July 2018

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Evolutionary paths underlying flower color variation in Antirrhinum.

5 July 2018

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Identification of QTLs controlling gene expression networks defined a priori

5 July 2018

1 reference

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Positive selection driving diversification in plant secondary metabolism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Biology and biochemistry of glucosinolates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Glucosinolate metabolism and its control

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Efficiency and power in genetic association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genomic survey of gene expression diversity in Arabidopsis thaliana.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Epistasis for fitness-related quantitative traits in Arabidopsis thaliana grown in the field and in the greenhouse

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Natural variation in Arabidopsis. How do we find the causal genes?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The pattern of polymorphism in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The glucosinolate-myrosinase system in an ecological and evolutionary context

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Association analysis of candidate genes for maysin and chlorogenic acid accumulation in maize silks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genome-wide association studies: theoretical and practical concerns

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genome-wide association studies for common diseases and complex traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Naturally occurring genetic variation in Arabidopsis thaliana.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The Ubiquitous Nature of Epistasis in Determining Susceptibility to Common Human Diseases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Glucosinolate research in the Arabidopsis era.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Comparative analysis of quantitative trait loci controlling glucosinolates, myrosinase and insect resistance in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The signature of positive selection at randomly chosen loci.

5 July 2018

1 reference

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The extent of linkage disequilibrium in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The ecological genetics of aliphatic glucosinolates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The genetic architecture of quantitative traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic glucosinolate production in Arabidopsis thaliana leaves and seeds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genetic control of natural variation in Arabidopsis glucosinolate accumulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Mapping quantitative trait loci in plants: uses and caveats for evolutionary biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Properties of statistical tests of neutrality for DNA polymorphism data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Effects of genetic perturbation on seasonal life history plasticity.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Next-generation genetics in plants

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Differential levels of insect herbivory in the field associated with genotypic variation in glucosinolates in Arabidopsis thaliana.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genotype, age, tissue, and environment regulate the structural outcome of glucosinolate activation.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Community complexity drives patterns of natural selection on a chemical defense of Brassica nigra

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Mutual feedbacks maintain both genetic and species diversity in a plant community

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Sequence diversity and haplotype associations with phenotypic responses to crowding: GIGANTEA affects fruit set in Arabidopsis thaliana

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Specialist and generalist herbivores exert opposing selection on a chemical defense

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Myzus persicae (green peach aphid) feeding on Arabidopsis induces the formation of a deterrent indole glucosinolate.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

The effects of artificial selection on the maize genome

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Genomic haplotype blocks may not accurately reflect spatial variation in historic recombination intensity.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Epistasis: too often neglected in complex trait studies?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana: recombinant expression and characterization of methylthioalkylmalate synthase, the condensing enzyme of the chain-elongation cycle

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Natural variation in light sensitivity of Arabidopsis

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

Selective sweep of a newly evolved sperm-specific gene in Drosophila.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2907214

QTL analysis of flowering time in Arabidopsis thaliana

29 October 2018

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12 December 2020

The genetics of plant metabolism

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12 December 2020

Linkage disequilibrium in finite populations

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12 December 2020

Rates and patterns of molecular evolution in inbred and outbred Arabidopsis

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12 December 2020

Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population

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12 December 2020

The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations

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12 December 2020

10.1534/GENETICS.109.108522

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference