(Q34014321)

30 July 2017

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds (English)

1 reference

30 July 2017

2

Kevin Y Sanbonmatsu

1 reference

30 July 2017

1

Angel E García

1 reference

PubMed ID

11867710

30 July 2017

language of work or name

English

0 references

publication date

26 February 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

1 reference

30 July 2017

99

1 reference

30 July 2017

2782-2787

1 reference

30 July 2017

5

1 reference

Transient UV Raman spectroscopy finds no crossing barrier between the peptide alpha-helix and fully random coil conformation

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Helix nucleation kinetics from molecular simulations in explicit solvent

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Study of the stability and unfolding mechanism of BBA1 by molecular dynamics simulations at different temperatures.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Interaction between water and polar groups of the helix backbone: an important determinant of helix propensities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Fast events in protein folding: helix melting and formation in a small peptide.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Conformational studies of poly-L-alanine in water.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Thermodynamics and mechanism of alpha helix initiation in alanine and valine peptides.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Unfolding of an ?-helix in water

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Molecular dynamics simulations of helix denaturation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

The mechanism of alpha-helix formation by peptides

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Reversible peptide folding in solution by molecular dynamics simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Electrostatic screening of charge and dipole interactions with the helix backbone

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Elucidating the folding problem of helical peptides using empirical parameters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Internal stark effect measurement of the electric field at the amino terminus of an alpha helix

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122425

Molecular dynamics with coupling to an external bath

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Conformational Diffusion and Helix Formation Kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Ion pair potentials-of-mean-force in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Computer simulation of aqueous Na-Cl electrolytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.042496899

Analysis of the heat capacity dependence of protein folding

21 January 2018

1 reference

12 December 2020

Folding-unfolding thermodynamics of a beta-heptapeptide from equilibrium simulations

1 reference

12 December 2020

Exploring the energy landscape of a beta hairpin in explicit solvent

1 reference

12 December 2020

Water-inserted alpha-helical segments implicate reverse turns as folding intermediates

1 reference

12 December 2020

Side chain contributions to the stability of alpha-helical structure in peptides

1 reference

12 December 2020

Nanosecond time scale folding dynamics of a pentapeptide in water

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.042496899

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

11867710