(Q34077306)

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Analysis of global gene expression and double-strand-break formation in DNA adenine methyltransferase- and mismatch repair-deficient Escherichia coli

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scholarly article

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Europe PubMed Central

PubMed publication ID

30 July 2017

Analysis of global gene expression and double-strand-break formation in DNA adenine methyltransferase- and mismatch repair-deficient Escherichia coli (English)

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

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Escherichia coli

1 reference

based on heuristic

inferred from title

DNA mismatch repair

1 reference

based on heuristic

inferred from title

author name string

Jennifer L Robbins-Manke

1

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Zoran Z Zdraveski

2

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Martin Marinus

3

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

John M Essigmann

4

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

language of work or name

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publication date

1 October 2005

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

Journal of Bacteriology

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

187

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

20

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

7027-7037

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

The Occurrence of a Genetic Transposition in a Strain of Escherichia Coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Isolation of SOS constitutive mutants of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Situational repair of replication forks: roles of RecG and RecA proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Isolation of a new hemimethylated DNA binding protein which regulates dnaA gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Role of SeqA and Dam in Escherichia coli gene expression: a global/microarray analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Summaries of Affymetrix GeneChip probe level data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Dam- and OxyR-dependent phase variation of agn43: essential elements and evidence for a new role of DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Cho, a second endonuclease involved in Escherichia coli nucleotide excision repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Rescue of stalled replication forks by RecG: simultaneous translocation on the leading and lagging strand templates supports an active DNA unwinding model of fork reversal and Holliday junction formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Abortive base-excision repair of radiation-induced clustered DNA lesions in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Very-short-patch repair in Escherichia coli requires the dam adenine methylase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

A case for sliding SeqA tracts at anchored replication forks during Escherichia coli chromosome replication and segregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Multiple genetic pathways for restarting DNA replication forks in Escherichia coli K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

lon incompatibility associated with mutations causing SOS induction: null uvrD alleles induce an SOS response in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Identification of additional genes belonging to the LexA regulon in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Recombination is essential for viability of an Escherichia coli dam (DNA adenine methyltransferase) mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

RecG helicase activity at three- and four-strand DNA structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Escherichia coli strains lacking protein HU are UV sensitive due to a role for HU in homologous recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Bidirectional excision in methyl-directed mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Methyl-directed mismatch repair is bidirectional

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Analysis of the genetic requirements for viability of Escherichia coli K-12 DNA adenine methylase (dam) mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

The dam and dcm strains of Escherichia coli--a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

The initiation cascade for chromosome replication in wild-type and Dam methyltransferase deficient Escherichia coli cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Increased sensitivity to gamma irradiation in bacteria lacking protein HU

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Escherichia coli K-12 clones that overproduce dam methylase are hypermutable.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Escherichia coli mutator mutants deficient in methylation-instructed DNA mismatch correction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Mismatch repair of cis-diamminedichloroplatinum(II)-induced DNA damage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Direct role of the Escherichia coli Dam DNA methyltransferase in methylation-directed mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Inviability of dam recA and dam recB cells of Escherichia coli is correlated with their inability to repair DNA double-strand breaks produced by mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

A simple technique for quantitation of low levels of DNA damage in individual cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Hemimethylation prevents DNA replication in E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

A simple and rapid method to obtain substitution mutations in Escherichia coli: isolation of a dam deletion/insertion mutation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

The replicative origin of the E. coli chromosome binds to cell membranes only when hemimethylated

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Isolation and characterization of the Escherichia coli mutH gene product.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Methylation of GATC sites is required for precise timing between rounds of DNA replication in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Methyl-directed DNA mismatch correction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Repair of DNA heteroduplexes containing small heterologous sequences in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Hyper-recombination in dam mutants of Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Adenine methylation of Okazaki fragments in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Pleiotropic effects of a DNA adenine methylation mutation (dam-3) in Escherichia coli K12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

5 July 2018

Cisplatin induces DNA double-strand break formation in Escherichia coli dam mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

RecN and RecG are required for Escherichia coli survival of Bleomycin-induced damage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

RecG helicase promotes DNA double-strand break repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

Dam-dependent phase variation of Ag43 in Escherichia coli is altered in a seqA mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

The ordered assembly of the phiX174-type primosome. I. Isolation and identification of intermediate protein-DNA complexes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

Repair of DNA double-strand breaks in Escherichia coli K12 requires a functional recN product

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1251628

28 October 2018

Isolation and characterization of Dam+ revertants and suppressor mutations that modify secondary phenotypes of dam-3 strains of Escherichia coli K-12

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation differentially enhances the expression of one of the two E. coli dnaA promoters in vivo and in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microgels for estimation of DNA strand breaks, DNA protein crosslinks and apoptosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation of DNA adenine methylase activity with spontaneous mutability in Escherichia coli K-12

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initiation of methyl-directed mismatch repair

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biological function for 6-methyladenine residues in the DNA of Escherichia coli K12

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Viability of Escherichia coli K-12 DNA adenine methylase (dam) mutants requires increased expression of specific genes in the SOS regulon

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visual quantification of DNA double-strand breaks in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation influences trpR promoter activity in Escherichia coli K-12

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of the histone-like proteins OsmZ and HU in homologous recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/16199573

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.187.20.7027-7037.2005

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

30 July 2017

ResearchGate publication ID

0 references

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