(Q34091371)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

title

Single genome analysis reveals genetic characteristics of Neuroadaptation across HIV-1 envelope (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

author name string

Teresa H Evering

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Edwin Kamau

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Leslie St Bernard

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Charles B Farmer

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Martin Markowitz

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

publication date

15 August 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

page(s)

65

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

12 March 2020

copyright license

start time

15 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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28 July 2018

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28 July 2018

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Selected amino acid mutations in HIV-1 B subtype gp41 are associated with specific gp120v₃ signatures in the regulation of co-receptor usage

28 July 2018

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HIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictors

28 July 2018

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Functional contributions of carbohydrate on AIDS virus glycoprotein

28 July 2018

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HIV-associated neurocognitive disorders persist in the era of potent antiretroviral therapy: CHARTER Study

28 July 2018

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An altered and more efficient mechanism of CCR5 engagement contributes to macrophage tropism of CCR5-using HIV-1 envelopes

28 July 2018

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DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

28 July 2018

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GUIDANCE: a web server for assessing alignment confidence scores.

28 July 2018

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Crystal structure of HIV-1 gp41 including both fusion peptide and membrane proximal external regions

28 July 2018

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Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection

28 July 2018

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Enhanced macrophage tropism of HIV in brain and lymphoid tissues is associated with sensitivity to the broadly neutralizing CD4 binding site antibody b12.

28 July 2018

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A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

28 July 2018

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Compartmentalized human immunodeficiency virus type 1 originates from long-lived cells in some subjects with HIV-1-associated dementia

28 July 2018

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Tissue-specific sequence alterations in the human immunodeficiency virus type 1 envelope favoring CCR5 usage contribute to persistence of dual-tropic virus in the brain

28 July 2018

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28 July 2018

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Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

28 July 2018

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28 July 2018

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Updated research nosology for HIV-associated neurocognitive disorders

28 July 2018

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28 July 2018

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Loss of the N-linked glycosylation site at position 386 in the HIV envelope V4 region enhances macrophage tropism and is associated with dementia.

28 July 2018

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The HIV Env variant N283 enhances macrophage tropism and is associated with brain infection and dementia.

28 July 2018

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28 July 2018

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28 July 2018

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See no evil, hear no evil, do no evil: the lessons of immune privilege

28 July 2018

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Cerebrospinal fluid HIV infection and pleocytosis: relation to systemic infection and antiretroviral treatment

28 July 2018

1 reference

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Neuropsychological aspects of coinfection with HIV and hepatitis C virus

28 July 2018

1 reference

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28 July 2018

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Human immunodeficiency virus type 1 genetic diversity in the nervous system: evolutionary epiphenomenon or disease determinant?

28 July 2018

1 reference

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Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy.

28 July 2018

1 reference

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Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis

28 July 2018

1 reference

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HIV dementia: an evolving disease

28 July 2018

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HyPhy: hypothesis testing using phylogenies

28 July 2018

1 reference

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Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region

28 July 2018

1 reference

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Biological analysis of human immunodeficiency virus type 1 R5 envelopes amplified from brain and lymph node tissues of AIDS patients with neuropathology reveals two distinct tropism phenotypes and identifies envelopes in the brain that confer an enh

28 July 2018

1 reference

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Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin

28 July 2018

1 reference

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Evidence for a change in AIDS dementia complex in the era of highly active antiretroviral therapy and the possibility of new forms of AIDS dementia complex

28 July 2018

1 reference

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Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase

28 July 2018

1 reference

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Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

28 July 2018

1 reference

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Genetic and functional analysis of full-length human immunodeficiency virus type 1 env genes derived from brain and blood of patients with AIDS.

28 July 2018

1 reference

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Turnover of env variable region 1 and 2 genotypes in subjects with late-stage human immunodeficiency virus type 1 infection

28 July 2018

1 reference

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Extended spectrum of HIV-1 reverse transcriptase mutations in patients receiving multiple nucleoside analog inhibitors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Antibody neutralization and escape by HIV-1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Microglia in human immunodeficiency virus-associated neurodegeneration.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Central nervous system damage, monocytes and macrophages, and neurological disorders in AIDS.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Differential CD4/CCR5 utilization, gp120 conformation, and neutralization sensitivity between envelopes from a microglia-adapted human immunodeficiency virus type 1 and its parental isolate

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

CAP3: A DNA sequence assembly program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Quantification of CD4, CCR5, and CXCR4 levels on lymphocyte subsets, dendritic cells, and differentially conditioned monocyte-derived macrophages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Microglia express CCR5, CXCR4, and CCR3, but of these, CCR5 is the principal coreceptor for human immunodeficiency virus type 1 dementia isolates.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

The HIV-1 Envelope Glycoproteins: Fusogens, Antigens, and Immunogens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Declining morbidity and mortality among patients with advanced human immunodeficiency virus infection. HIV Outpatient Study Investigators

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Change in coreceptor use correlates with disease progression in HIV-1--infected individuals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Mapping of independent V3 envelope determinants of human immunodeficiency virus type 1 macrophage tropism and syncytium formation in lymphocytes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Host factors and the pathogenesis of HIV-induced disease

28 July 2018

1 reference

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28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Demented and nondemented patients with AIDS differ in brain-derived human immunodeficiency virus type 1 envelope sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Small amino acid sequence changes within the V2 domain can affect the function of a T-cell line-tropic human immunodeficiency virus type 1 envelope gp120.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Evidence for early central nervous system involvement in the acquired immunodeficiency syndrome (AIDS) and other human immunodeficiency virus (HIV) infections. Studies with neuropsychologic testing and magnetic resonance imaging

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Detection of AIDS virus in macrophages in brain tissue from AIDS patients with encephalopathy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

A cladistic measure of gene flow inferred from the phylogenies of alleles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Pathogenesis of lentivirus infections

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

The rapid generation of mutation data matrices from protein sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

A statistical test for detecting geographic subdivision

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Signature pattern analysis: a method for assessing viral sequence relatedness

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

An infectious molecular clone of an unusual macrophage-tropic and highly cytopathic strain of human immunodeficiency virus type 1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Human immunodeficiency virus-associated dementia: an evolving disease

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

The prevalence and incidence of neurocognitive impairment in the HAART era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Neuropathologic confirmation of definitional criteria for human immunodeficiency virus-associated neurocognitive disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

HIV in body fluids during primary HIV infection: implications for pathogenesis, treatment and public health

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Pathways to neuronal injury and apoptosis in HIV-associated dementia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Genetic attributes of cerebrospinal fluid-derived HIV-1 env.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Differences in human immunodeficiency virus type 1 V3 sequences from patients with and without AIDS dementia complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Macrophage tropism of human immunodeficiency virus type 1 isolates from brain and lymphoid tissues predicts neurotropism independent of coreceptor specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Macrophage entry mediated by HIV Envs from brain and lymphoid tissues is determined by the capacity to use low CD4 levels and overall efficiency of fusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

HIV-1 tropism for the central nervous system: Brain-derived envelope glycoproteins with lower CD4 dependence and reduced sensitivity to a fusion inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Increased CCR5 affinity and reduced CCR5/CD4 dependence of a neurovirulent primary human immunodeficiency virus type 1 isolate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Variation in HIV-1 R5 macrophage-tropism correlates with sensitivity to reagents that block envelope: CD4 interactions but not with sensitivity to other entry inhibitors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Initial validation of a screening battery for the detection of HIV-associated cognitive impairment

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

A robust measure of HIV-1 population turnover within chronically infected individuals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Population-based V3 genotypic tropism assay: a retrospective analysis using screening samples from the A4001029 and MOTIVATE studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

The blood-brain barrier and its role in immune privilege in the central nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Characterization of HIV type 1 env gene in cerebrospinal fluid and blood of infected Chinese patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Interpreting cerebrospinal fluid pleocytosis in HIV in the era of potent antiretroviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

HIV vaccine design and the neutralizing antibody problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Using HIV-1 sequence variability to explore virus biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Asn 362 in gp120 contributes to enhanced fusogenicity by CCR5-restricted HIV-1 envelope glycoprotein variants from patients with AIDS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12977-014-0065-0

Maintaining the integrity of human immunodeficiency virus sequence databases.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145222

Clinical and epidemiologic features of primary HIV infection

28 October 2018

1 reference

12 December 2020

Neurological complications of HIV infection

1 reference

12 December 2020

Neurocognitive impairment is an independent risk factor for death in HIV infection. San Diego HIV Neurobehavioral Research Center Group

1 reference

12 December 2020

Epidemiology of HIV/AIDS--United States, 1981-2005

1 reference

12 December 2020

Bioinformatics prediction of HIV coreceptor usage

1 reference

12 December 2020

Detecting hypermutations in viral sequences with an emphasis on G --> A hypermutation

1 reference

12 December 2020

10.1186/S12977-014-0065-0

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25125210%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25125210

1 reference