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Computational methods for protein function analysis.
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scholarly article
1 reference
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Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
review article
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Europe PubMed Central
title
Computational methods for protein function analysis
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
main subject
computational biology
1 reference
based on heuristic
inferred from title
author
Matteo Pellegrini
series ordinal
1
1 reference
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Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
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3 November 2019
author name string
Pellegrini M
series ordinal
1
1 reference
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Europe PubMed Central
PubMed ID
11166647
retrieved
31 July 2017
publication date
1 February 2001
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
published in
Current Opinion in Chemical Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
volume
5
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
page(s)
46-50
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
issue
1
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
cites work
A general method applicable to the search for similarities in the amino acid sequence of two proteins
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
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Identification of common molecular subsequences
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Crossref
reference URL
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7 January 2021
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Hidden Markov models in computational biology. Applications to protein modeling
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
The Pfam protein families database.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Bayesian adaptive sequence alignment algorithms.
1 reference
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reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Intermediate sequences increase the detection of homology between sequences
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Detecting protein function and protein-protein interactions from genome sequences
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein interaction maps for complete genomes based on gene fusion events
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
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inferred from DOI database lookup
GeneRAGE: a robust algorithm for sequence clustering and domain detection.
1 reference
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7 January 2021
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inferred from DOI database lookup
Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis
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7 January 2021
based on heuristic
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Co-evolution of proteins with their interaction partners
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
A genomic perspective on protein families
1 reference
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Crossref
reference URL
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7 January 2021
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The COG database: a tool for genome-scale analysis of protein functions and evolution
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7 January 2021
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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
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7 January 2021
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Conservation of gene order: a fingerprint of proteins that physically interact
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Conserved clusters of functionally related genes in two bacterial genomes.
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7 January 2021
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The use of gene clusters to infer functional coupling
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7 January 2021
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Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans
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7 January 2021
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RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.
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7 January 2021
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Serial analysis of gene expression
1 reference
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7 January 2021
based on heuristic
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Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Cluster analysis and display of genome-wide expression patterns
1 reference
stated in
Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Functional discovery via a compendium of expression profiles
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein function in the post-genomic era.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Who's your neighbor? New computational approaches for functional genomics
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Computing protein function.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Predicting protein function by genomic context: quantitative evaluation and qualitative inferences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
Guilt by association: contextual information in genome analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
A combined algorithm for genome-wide prediction of protein function
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
inferred from DOI database lookup
E-CELL: software environment for whole-cell simulation
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
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The segment polarity network is a robust developmental module
1 reference
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Crossref
reference URL
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7 January 2021
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The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS1367-5931%2800%2900165-4
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7 January 2021
based on heuristic
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Identifiers
DOI
10.1016/S1367-5931(00)00165-4
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
PubMed ID
11166647
1 reference
stated in
Europe PubMed Central
PubMed ID
11166647
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11166647%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 November 2019
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