(Q34154113)

31 July 2017

msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies (English)

1 reference

31 July 2017

1 reference

Rainer Breitling

2

0 references

Rainer Bischoff

object named as

Rainer Bischoff

4

0 references

Peter Horvatovich

object named as

Peter Horvatovich

5

0 references

author name string

Berend Hoekman

1

1 reference

PubMed ID

22318370

31 July 2017

Frank Suits

3

1 reference

31 July 2017

7 February 2012

1 reference

Molecular & Cellular Proteomics

31 July 2017

1 reference

31 July 2017

11

1 reference

31 July 2017

M111.015974

1 reference

31 July 2017

6

1 reference

Recent advances of chromatography and mass spectrometry in lipidomics

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Computational mass spectrometry for metabolomics: identification of metabolites and small molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Options and considerations when selecting a quantitative proteomics strategy

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

mMass 3: a cross-platform software environment for precise analysis of mass spectrometric data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Decoding signalling networks by mass spectrometry-based proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Dealing with the unknown: metabolomics and metabolite atlases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Peptidomics coming of age: a review of contributions from a bioinformatics angle.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Quantitation in mass-spectrometry-based proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Review of peak detection algorithms in liquid-chromatography-mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Time alignment algorithms based on selected mass traces for complex LC-MS data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

emPAI Calc--for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

OpenMS and TOPP: open source software for LC-MS data analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

An introduction to liquid chromatography-mass spectrometry instrumentation applied in plant metabolomic analyses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Application of LC/MS to proteomics studies: current status and future prospects

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

TOPPView: an open-source viewer for mass spectrometry data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

apLCMS--adaptive processing of high-resolution LC/MS data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Isotope dilution strategies for absolute quantitative proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Quantitative interaction proteomics using mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Optimized time alignment algorithm for LC-MS data: correlation optimized warping using component detection algorithm-selected mass chromatograms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

mzML: a single, unifying data format for mass spectrometer output

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Two-dimensional method for time aligning liquid chromatography-mass spectrometry data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

OpenMS - an open-source software framework for mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Chip-LC-MS for label-free profiling of human serum.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

A geometric approach for the alignment of liquid chromatography-mass spectrometry data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Data processing for mass spectrometry-based metabolomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

MapQuant: open-source software for large-scale protein quantification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Galaxy: a platform for interactive large-scale genome analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Processing methods for differential analysis of LC/MS profile data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

A common open representation of mass spectrometry data and its application to proteomics research

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

Mass spectrometry in high-throughput proteomics: ready for the big time.

28 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Mass spectrometry: from proteomics to metabolomics and lipidomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Comparative LC-MS: a landscape of peaks and valleys

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Role of spectral counting in quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Alignment using variable penalty dynamic time warping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Signal maps for mass spectrometry-based comparative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

ChromAlign: A two-step algorithmic procedure for time alignment of three-dimensional LC-MS chromatographic surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Increasing the mass accuracy of high-resolution LC-MS data using background ions: a case study on the LTQ-Orbitrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Tackling quantitation: a report on the annual Spring Workshop of the HUPO-PSI 28-30 March 2010, Seoul, South Korea

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.015974

Galaxy: a web-based genome analysis tool for experimentalists

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433919

The pros and cons of peptide-centric proteomics

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22318370

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M111.015974

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

22318370