(Q34189241)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

author name string

Thomas D Schneider

series ordinal

1

1 reference

PubMed publication ID

20562221

31 July 2017

language of work or name

English

0 references

publication date

18 June 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

volume

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

issue

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

page(s)

5995-6006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 2.5 Generic

5 February 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Discovery of novel tumor suppressor p53 response elements using information theory

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Correlation between binding rate constants and individual information of E. coli Fis binding sites

5 July 2018

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CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Contribution to the Energetics of Evolution

5 July 2018

1 reference

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Claude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

WebLogo: A Sequence Logo Generator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

5 July 2018

Consensus sequence Zen

1 reference

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Additivity in protein-DNA interactions: how good an approximation is it?

5 July 2018

1 reference

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The P1 phage replication protein RepA contacts an otherwise inaccessible thymine N3 proton by DNA distortion or base flipping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Evolution of biological information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

DNA binding sites: representation and discovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Exact numerical simulation of the Ornstein-Uhlenbeck process and its integral

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Replication control of plasmid P1 and its host chromosome: the common ground.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Information analysis of sequences that bind the replication initiator RepA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Protein-DNA complexes: the cost of recognition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Activation of DNA binding by the monomeric form of the P1 replication initiator RepA by heat shock proteins DnaJ and DnaK.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Investigations of the thermal response of laser-excited biomolecules

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Missing-base and ethylation interference footprinting of P1 plasmid replication initiator

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

The photosensitivities of visual pigments in the presence of hydroxylamine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

The Molecular Basis of Visual Excitation

5 July 2018

1 reference

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Information content of binding sites on nucleotide sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Accuracy of the EcoRI restriction endonuclease: binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

The energetic basis of specificity in the Eco RI endonuclease--DNA interaction.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Sequence logos: a new way to display consensus sequences

5 July 2018

1 reference

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Theory of molecular machines. I. Channel capacity of molecular machines.

5 July 2018

1 reference

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Theory of molecular machines. II. Energy dissipation from molecular machines.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Sequence-specific recognition of double helical nucleic acids by proteins

5 July 2018

1 reference

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Specificity of substrate recognition by the EcoRI restriction endonuclease

5 July 2018

1 reference

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EcoRI★ activity: Enzyme modification or activation of accompanying endonuclease?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Defining the thermodynamics of protein/DNA complexes and their components using micro-calorimetry

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

pH and rate of "dark" events in toad retinal rods: test of a hypothesis on the molecular origin of photoreceptor noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

Theoretical aspects of specific and non-specific equilibrium binding of proteins to DNA as studied by the nitrocellulose filter binding assay. Co-operative and non-co-operative binding to a one-dimensional lattice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

Information content of individual genetic sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

Isolation, sequence analysis, and intron-exon arrangement of the gene encoding bovine rhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ389

DNA sequences of structural genes for Eco RI DNA restriction and modification enzymes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2952855

Cation Dependence of Restriction Endonuclease EcoRI Activity

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20562221

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Spermidine increases the accuracy of type II restriction endonucleases. Suppression of cleavage at degenerate, non-symmetrical sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20562221

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ389

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20562221%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

PubMed publication ID

20562221

1 reference