(Q34271370)

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MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity

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scholarly article

1 reference

Europe PubMed Central

1 August 2017

MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity (English)

1 reference

Europe PubMed Central

1 August 2017

1 reference

based on heuristic

inferred from title

4

1 reference

Europe PubMed Central

1 August 2017

7

object named as

Oliver Fiehn

1 reference

Europe PubMed Central

1 August 2017

Gert Wohlgemuth

3

object named as

Gert Wohlgemuth

1 reference

Europe PubMed Central

1 August 2017

Dinesh K Barupal

object named as

Dinesh K Barupal

1

0 references

Kent E Pinkerton

6

object named as

Kent E Pinkerton

1 reference

Europe PubMed Central

1 August 2017

author name string

Pradeep K Haldiya

2

1 reference

Europe PubMed Central

1 August 2017

Shanker L Kothari

5

1 reference

Europe PubMed Central

1 August 2017

publication date

16 May 2012

1 reference

Europe PubMed Central

1 August 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

1 August 2017

13

1 reference

Europe PubMed Central

1 August 2017

99

1 reference

Europe PubMed Central

1 August 2017

describes a project that uses

1 reference

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-99

0 references

Optimization and testing of mass spectral library search algorithms for compound identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Chemical substructure identification by mass spectral library searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Decision tree supported substructure prediction of metabolites from GC-MS profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

PathPred: an enzyme-catalyzed metabolic pathway prediction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Finding metabolic pathways using atom tracking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Long-chain fatty acid combustion rate is associated with unique metabolite profiles in skeletal muscle mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Enzyme promiscuity: a mechanistic and evolutionary perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Metabolomic changes accompanying transformation and acquisition of metastatic potential in a syngeneic mouse mammary tumor model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

What makes an enzyme promiscuous?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Prenatal exposure to environmental tobacco smoke alters gene expression in the developing murine hippocampus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

SMPDB: The Small Molecule Pathway Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Inferring branching pathways in genome-scale metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The NCBI BioSystems database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Human gut microbiome adopts an alternative state following small bowel transplantation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Network visualization and analysis of gene expression data using BioLayout Express(3D).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The effects of smoking on the developing lung: insights from a biologic model for lung development, homeostasis, and repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The conservation and evolutionary modularity of metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

PubChem: a public information system for analyzing bioactivities of small molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Modulation of pentose phosphate pathway during cell cycle progression in human colon adenocarcinoma cell line HT29.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Dysregulated gene expression networks in human acute myelogenous leukemia stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Metabolite profiling of human colon carcinoma--deregulation of TCA cycle and amino acid turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The public road to high-quality curated biological pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

WikiPathways: pathway editing for the people

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Extending the breadth of metabolite profiling by gas chromatography coupled to mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

KEGG Atlas mapping for global analysis of metabolic pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

iPath: interactive exploration of biochemical pathways and networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Quality control for plant metabolomics: reporting MSI-compliant studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

KEGG for linking genomes to life and the environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

SetupX--a public study design database for metabolomic projects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Carbon-fate maps for metabolic reactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

ChEBI: a database and ontology for chemical entities of biological interest

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The Edinburgh human metabolic network reconstruction and its functional analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Genome wide expression analysis in HPV16 cervical cancer: identification of altered metabolic pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Reactome: a knowledge base of biologic pathways and processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

HMDB: the Human Metabolome Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Conservation of the metabolomic response to starvation across two divergent microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Enzyme promiscuity: evolutionary and mechanistic aspects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Regulation of late G1/S phase transition and APC Cdh1 by reactive oxygen species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

A metabolic network in the evolutionary context: multiscale structure and modularity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Environmental tobacco smoke suppresses nuclear factor-kappaB signaling to increase apoptosis in infant monkey lungs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Phylophenetic properties of metabolic pathway topologies as revealed by global analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

How exposure to environmental tobacco smoke, outdoor air pollutants, and increased pollen burdens influences the incidence of asthma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Pathguide: a pathway resource list

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Metabolic PathFinding: inferring relevant pathways in biochemical networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Discovery of meaningful associations in genomic data using partial correlation coefficients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Prenatal and postnatal environmental tobacco smoke exposure and children's health.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The metabolic world of Escherichia coli is not small

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

In Silico Atomic Tracing by Substrate-Product Relationships in Escherichia coli Intermediary Metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Purine biosynthesis. Big in cell division, even bigger in nitrogen assimilation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Analysis of highly polar compounds of plant origin: combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The KEGG databases at GenomeNet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Metabolite profiling for plant functional genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The large-scale organization of metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Maternal smoking during pregnancy, environmental tobacco smoke exposure and childhood lung function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

The EcoCyc and MetaCyc databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Mainstream and sidestream cigarette smoke-induced DNA adducts in C7Bl and DBA mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Role of fatty acids in lung development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Intermediary metabolism of the lung

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Enzyme activities related to fatty acid synthesis in developing mammalian lung.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Uric acid is a major antioxidant in human nasal airway secretions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3495401

6 July 2018

Acute and short-term effects of secondhand smoke on lung function and cytokine production

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-99

21 January 2018

Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-99

21 January 2018

Observing and interpreting correlations in metabolomic networks.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-99

21 January 2018

Eliciting possible reaction equations and metabolic pathways involving orphan metabolites

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-99

21 January 2018

Metabolic Pathfinding Using RPAIR Annotation

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-13-99

21 January 2018

De novo fatty acid synthesis in developing rat lung

1 reference

https://pubmed.ncbi.nlm.nih.gov/22591066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of maternal cigarette smoking during pregnancy on fetal and childhood growth

1 reference

https://pubmed.ncbi.nlm.nih.gov/22591066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In utero exposure to cigarette smoking influences lung function at birth

1 reference

https://pubmed.ncbi.nlm.nih.gov/22591066

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-13-99

1 reference

Europe PubMed Central

1 August 2017

DBLP publication ID

journals/bmcbi/BarupalHWKKPF12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

ResearchGate publication ID

0 references

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