(Q34426189)

2 August 2017

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title

Metabolic footprinting and systems biology: the medium is the message (English)

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2 August 2017

1

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2 August 2017

4

Warwick B Dunn

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2 August 2017

5

Irena Spasic

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ORCID Public Data File 2021

2 August 2017

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author name string

Marie Brown

series ordinal

2

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2 August 2017

Hazel M Davey

series ordinal

3

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2 August 2017

Stephen G Oliver

series ordinal

6

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2 August 2017

language of work or name

English

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publication date

1 July 2005

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Nature Reviews Microbiology

2 August 2017

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2 August 2017

3

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2 August 2017

557-565

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2 August 2017

7

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https://scigraph.springernature.com/pub.10.1038/nrmicro1177

2 August 2017

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A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

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Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway

21 January 2018

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Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

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Pheromones, social behaviour and the functions of secondary metabolism in bacteria

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Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass Spectrometry

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Metabolite profiling for plant functional genomics

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Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems

21 January 2018

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Closed-loop, multiobjective optimization of analytical instrumentation: gas chromatography/time-of-flight mass spectrometry of the metabolomes of human serum and of yeast fermentations.

21 January 2018

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Quantification of intracellular metabolites in Escherichia coli K12 using liquid chromatographic-electrospray ionization tandem mass spectrometric techniques

21 January 2018

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A metabonomic investigation of the biochemical effects of mercuric chloride in the rat using 1H NMR and HPLC-TOF/MS: time dependent changes in the urinary profile of endogenous metabolites as a result of nephrotoxicity

21 January 2018

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Metabolic channeling versus free diffusion: transition-time analysis

21 January 2018

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The naturally occurring furanones: formation and function from pheromone to food

21 January 2018

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Do bacteria need to communicate with each other for growth?

21 January 2018

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Census and consensus in bacterial ecosystems: the LuxR-LuxI family of quorum-sensing transcriptional regulators

21 January 2018

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21 January 2018

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Characterization of an autostimulatory substance produced by Escherichia coli

21 January 2018

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Flux analysis and control of the central metabolic pathways in Escherichia coli

21 January 2018

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Searching for process information in the aroma of cell cultures

21 January 2018

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High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

21 January 2018

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Metabolomics – the link between genotypes and phenotypes

21 January 2018

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Matrix method for determining steps most rate-limiting to metabolic fluxes in biotechnological processes.

21 January 2018

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Functional genomics via metabolic footprinting: monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT-IR and direct injection electrospray mass spectrometry

21 January 2018

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Discrimination of modes of action of antifungal substances by use of metabolic footprinting.

21 January 2018

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Genotype-phenotype mapping: genes as computer programs

21 January 2018

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Chemical genetics resulting from a passion for synthetic organic chemistry.

21 January 2018

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Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips

21 January 2018

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Visualizing plant metabolomic correlation networks using clique-metabolite matrices.

21 January 2018

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Metabolic networks of Cucurbita maxima phloem

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Observing and interpreting correlations in metabolomic networks.

21 January 2018

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Hierarchical organization of modularity in metabolic networks

21 January 2018

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Reverse engineering of biological complexity

21 January 2018

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Network biology: understanding the cell's functional organization

21 January 2018

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Modular Response Analysis of Cellular Regulatory Networks

21 January 2018

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Revealing modular organization in the yeast transcriptional network.

21 January 2018

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Evidence for dynamically organized modularity in the yeast protein-protein interaction network

21 January 2018

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Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

21 January 2018

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Functional discovery via a compendium of expression profiles

21 January 2018

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Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network.

21 January 2018

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Explanatory Optimization of Protein Mass Spectrometry via Genetic Search

21 January 2018

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Selective detection of proteins in mixtures using electrospray ionization mass spectrometry: influence of instrumental settings and implications for proteomics

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Functional genomic hypothesis generation and experimentation by a robot scientist

21 January 2018

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GC-MS libraries for the rapid identification of metabolites in complex biological samples

21 January 2018

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21 January 2018

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Multidimensional separations in the pharmaceutical arena

21 January 2018

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Yeast as a touchstone in post-genomic research: strategies for integrative analysis in functional genomics

21 January 2018

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Human genetic diseases: a cross-talk between man and yeast

21 January 2018

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Using yeast to place human genes in functional categories

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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A proposed framework for the description of plant metabolomics experiments and their results

21 January 2018

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Potential of metabolomics as a functional genomics tool.

21 January 2018

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A common open representation of mass spectrometry data and its application to proteomics research

21 January 2018

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CEBS object model for systems biology data, SysBio-OM.

21 January 2018

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XML, bioinformatics and data integration

21 January 2018

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 January 2018

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A new approach to decoding life: systems biology

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1177

Systems biology: integrating technology, biology, and computation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1177

Metabolic control theory: its role in microbiology and biotechnology

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1177

Systems biology: a brief overview

21 January 2018

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Further advances in the development of a data interchange standard for proteomics data.

21 January 2018

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Common interchange standards for proteomics data: Public availability of tools and schema

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1177

On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Metabonomic analysis of mouse urine by liquid-chromatography-time of flight mass spectrometry (LC-TOFMS): detection of strain, diurnal and gender differences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Ultra-performance liquid chromatography coupled to quadrupole-orthogonal time-of-flight mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Metabolic engineering--methodologies and future prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Thirteen years of building constraint-based in silico models of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

The control of enzyme systems in vivo: elasticity analysis of the steady state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Genomic computing. Explanatory analysis of plant expression profiling data using machine learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

MathSBML: a package for manipulating SBML-based biological models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Characterization of Metabolites in IntactStreptomyces citricolorCulture Supernatants Using High-Resolution Nuclear Magnetic Resonance and Directly Coupled High-Pressure Liquid Chromatography–Nuclear Magnetic Resonance Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry (GC × GC-TOF) for high resolution metabolomics: biomarker discovery on spleen tissue extracts of obese NZO compared to lean C57BL/6 mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

The role of analytical sciences in medical systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Yeast as a navigational aid in genome analysis. 1996 Kathleen Barton-Wright Memorial Lecture.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

A method for the determination of changes of glycolytic metabolites in yeast on a subsecond time scale using extraction at neutral pH

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

17 Metabolic Control Analysis as a Tool in the Elucidation of the Function of Novel Genes

31 March 2020

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A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1177

NMR Spectroscopy of Biofluids

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Determination of amino acid isotope enrichment using liquid chromatography-mass spectrometry

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Very high pressure HPLC with 1 mm id columns

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Understanding 'Global' Systems Biology: Metabonomics and the Continuum of Metabolism

31 March 2020

1 reference

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Conditional synthesis and utilization of 1,5-anhydroglucitol in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

MALDI-TOF MS for quantification of substrates and products in cultivations ofCorynebacterium glutamicum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Heteronuclear NMR studies of metabolites produced by Cryptococcus neoformans in culture media: identification of possible virulence factors

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

The role of energy-spilling reactions in the growth of Klebsiella aerogenes NCTC 418 in aerobic chemostat culture

31 March 2020

1 reference

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Can a biologist fix a radio?--Or, what I learned while studying apoptosis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

A metabolome pipeline: from concept to data to knowledge

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Design and implementation of microarray gene expression markup language (MAGE-ML)

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

GMD@CSB.DB: the Golm Metabolome Database

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Systems biology markup language: Level 2 and beyond

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Metabolic control theory: its role in microbiology and biotechnology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

Toward a science of metabolic engineering

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1177

31 March 2020

Identifiers

DOI

10.1038/NRMICRO1177

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference