(Q34547091)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

Salmonella Typhimurium

object named as

Salmonella Typhimurium

1 reference

1 reference

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Ines Thiele

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Doug K. Allen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Pep Charusanti

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Ronan Mt Fleming

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Sigrid De Keersmaecker

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Kathleen Marchal

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Emre Özdemir

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Sara Sigurbjornsdottir

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Karsten Zengler

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Joshua N Adkins

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

22

Neil Swainston

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

25

Bernhard O Palsson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

17

Jennifer L Reed

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

2

Daniel R Hyduke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

author name string

Benjamin Steeb

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Guy Fankam

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Susanna Bazzani

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Feng-Chi Chen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Chao A Hsiung

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Monica L Mo

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Anu Raghunathan

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Sook-il Shin

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Jonas Steinmann

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Suresh Sudarsan

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Inge M Thijs

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Dirk Bumann

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

language of work or name

1 reference

18 January 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

page(s)

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1752-0509-5-8

20 January 2020

exact match

0 references

cites work

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Gut inflammation provides a respiratory electron acceptor for Salmonella

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Reconstruction annotation jamborees: a community approach to systems biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Towards genome-scale signalling network reconstructions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

A protocol for generating a high-quality genome-scale metabolic reconstruction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Applications of genome-scale metabolic reconstructions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Genome-scale gene/reaction essentiality and synthetic lethality analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Functional states of the genome-scale Escherichia coli transcriptional regulatory system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Identification of potential pathway mediation targets in Toll-like receptor signaling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Reconstruction of biochemical networks in microorganisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Growth control in the Salmonella-containing vacuole.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

KEGG for linking genomes to life and the environment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

The Edinburgh human metabolic network reconstruction and its functional analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Global reconstruction of the human metabolic network based on genomic and bibliomic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

BRENDA, AMENDA and FRENDA: the enzyme information system in 2007

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Multi-target therapeutics: when the whole is greater than the sum of the parts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Robust Salmonella metabolism limits possibilities for new antimicrobials.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Towards multidimensional genome annotation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Amino acid metabolism of Salmonellae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Salmonella: a model for bacterial pathogenesis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Virulence of antibiotic-resistant Salmonella typhimurium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Compounds Which Serve as the Sole Source of Carbon or Nitrogen for Salmonella typhimurium LT-2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Optimization based automated curation of metabolic reconstructions

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Escherichia coli YtfE is a di-iron protein with an important function in assembly of iron-sulphur clusters.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Lack of development of new antimicrobial drugs: a potential serious threat to public health.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3032673

Two-dimensional annotation of genomes

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21244678

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-5-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcsb/ThieleHSFABCCFHKLMMORRSSSSSTZPAB11

20 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21244678%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference