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Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
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scholarly article
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Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
review article
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Europe PubMed Central
title
Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
main subject
DNA methylation
0 references
author
Albert Jeltsch
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
publication date
1 April 2002
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
published in
ChemBioChem
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
volume
3
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stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
page(s)
274-293
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stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
issue
4
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stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
cites work
DNA methyltransferases
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DNA modification by methyltransferases
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Structure and function of DNA methyltransferases.
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21 January 2018
AdoMet-dependent methylation, DNA methyltransferases and base flipping
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Eukaryotic DNA methyltransferases--structure and function
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The DNA methyltransferases of mammals
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DNA methylation in health and disease
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Methylation moves into medicine
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Restriction and modification systems
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Recognition and cleavage of DNA by type-II restriction endonucleases
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Structure and function of type II restriction endonucleases
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Timing and targeting: the biological functions of Dam methylation in E. coli.
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The great GATC: DNA methylation in E. coli
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Asymmetry of Dam remethylation on the leading and lagging arms of plasmid replicative intermediates
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DNA methylation in Escherichia coli
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An essential role for DNA adenine methylation in bacterial virulence
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Gene may promise new route to potent vaccines
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A microfabricated device for sizing and sorting DNA molecules
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In vivo gene expression and the adaptive response: from pathogenesis to vaccines and antimicrobials
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Hypermutation in pathogenic bacteria: frequent phase variation in meningococci is a phenotypic trait of a specialized mutator biotype.
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A cell cycle-regulated bacterial DNA methyltransferase is essential for viability
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Mechanism-based inhibition of an essential bacterial adenine DNA methyltransferase: rationally designed antibiotics
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Amino acid sequence arrangements of DNA-methyltransferases
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Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes.
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Circular Permutations in the Molecular Evolution of DNA Methyltransferases
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The DNA (cytosine-5) methyltransferases
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Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine
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The crystal structure of HaeIII methyltransferase convalently complexed to DNA: an extrahelical cytosine and rearranged base pairing
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Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine
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Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment
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Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of streptococcus pneumoniae bound to S-adenosylmethionine
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Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases
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HhaI methyltransferase flips its target base out of the DNA helix
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Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog
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On base flipping
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Finding a basis for flipping bases.
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Mechanistic link between DNA methyltransferases and DNA repair enzymes by base flipping
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BASE FLIPPING
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Functional roles of conserved amino acid residues in DNA methyltransferases investigated by site-directed mutagenesis of the EcoRV adenine-N6-methyltransferase.
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Differential binding of S-adenosylmethionine S-adenosylhomocysteine and Sinefungin to the adenine-specific DNA methyltransferase M.TaqI
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The double role of methyl donor and allosteric effector of S-adenosyl-methionine for Dam methylase of E. coli
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Allosteric and catalytic binding of S-adenosylmethionine to Escherichia coli DNA adenine methyltransferase monitored by 3H NMR
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A dual role for substrate S-adenosyl-L-methionine in the methylation reaction with bacteriophage T4 Dam DNA-[N6-adenine]-methyltransferase
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Covalent bond formation between a DNA-cytosine methyltransferase and DNA containing 5-azacytosine
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Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes
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On the Substrate Specificity of DNA Methyltransferases
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The cytosine N4-methyltransferase M.PvuII also modifies adenine residues
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Molecular evolution of DNA-(cytosine-N4) methyltransferases: evidence for their polyphyletic origin
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The role of the preserved sequences of Dam methylase
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Substrate DNA and cofactor regulate the activities of a multi-functional restriction-modification enzyme, BcgI.
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Functional mapping of the EcoRV DNA methyltransferase by random mutagenesis and screening for catalytically inactive mutants
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Mutational analysis of target base flipping by the EcoRV adenine-N6 DNA methyltransferase
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Changing the target base specificity of the EcoRV DNA methyltransferase by rational de novo protein-design
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Kinetic mechanism of the EcoRI DNA methyltransferase
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Molecular enzymology of the EcoRV DNA-(Adenine-N (6))-methyltransferase: kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA.
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Substrate binding in vitro and kinetics of RsrI [N6-adenine] DNA methyltransferase
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Reconciling structure and function in HhaI DNA cytosine-C-5 methyltransferase
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The mechanism of DNA cytosine-5 methylation. Kinetic and mutational dissection of Hhai methyltransferase
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Contribution of facilitated diffusion and processive catalysis to enzyme efficiency: implications for the EcoRI restriction-modification system.
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A cell cycle-regulated adenine DNA methyltransferase from Caulobacter crescentus processively methylates GANTC sites on hemimethylated DNA
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Facilitated diffusion of the EcoRI DNA methyltransferase is described by a novel mechanism
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Sequence-specific recognition of cytosine C5 and adenine N6 DNA methyltransferases requires different deformations of DNA.
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Angle and locus of the bend induced by the msp I DNA methyltransferase in a sequence-specific complex with DNA
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DNA bending induced by DNA (cytosine-5) methyltransferases
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DNA distortion and base flipping by the EcoRV DNA methyltransferase. A study using interference at dA and T bases and modified deoxynucleosides
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Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence
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Kinetics of methylation and binding of DNA by the EcoRV adenine-N6 methyltransferase
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Role of DNA minor groove interactions in substrate recognition by the M.SinI and M.EcoRII DNA (cytosine-5) methyltransferases
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21 January 2018
How does a DNA interacting enzyme change its specificity during molecular evolution? A site-directed mutagenesis study at the DNA binding site of the DNA-(adenine-N6)-methyltransferase EcoRV.
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21 January 2018
DpnA, a methylase for single-strand DNA in the Dpn II restriction system, and its biological function
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21 January 2018
Chemical display of thymine residues flipped out by DNA methyltransferases
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21 January 2018
Targeted base stacking disruption by the EcoRI DNA methyltransferase.
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21 January 2018
2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases
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21 January 2018
Direct real time observation of base flipping by the EcoRI DNA methyltransferase
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Crossref
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21 January 2018
M.HhaI binds tightly to substrates containing mismatches at the target base
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Crossref
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21 January 2018
HhaI and HpaII DNA methyltransferases bind DNA mismatches, methylate uracil and block DNA repair
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Crossref
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21 January 2018
Interaction of the type I methyltransferase M.EcoR124I with modified DNA substrates: sequence discrimination and base flipping
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Crossref
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21 January 2018
Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target base
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Crossref
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21 January 2018
Dynamic modes of the flipped-out cytosine during HhaI methyltransferase-DNA interactions in solution.
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21 January 2018
Measurement of the absolute temporal coupling between DNA binding and base flipping
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21 January 2018
Functional analysis of Gln-237 mutants of HhaI methyltransferase
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21 January 2018
Epigenetics: regulation through repression
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21 January 2018
Translating the Histone Code
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21 January 2018
Synergistic effect of histone hyperacetylation and DNA demethylation in the reactivation of the FMR1 gene.
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21 January 2018
Synergism of Xist RNA, DNA methylation, and histone hypoacetylation in maintaining X chromosome inactivation
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21 January 2018
Selective association of the methyl-CpG binding protein MBD2 with the silent p14/p16 locus in human neoplasia
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21 January 2018
Emerging connections between DNA methylation and histone acetylation.
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21 January 2018
A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
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21 January 2018
Sp1 elements protect a CpG island from de novo methylation
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21 January 2018
Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island
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21 January 2018
Chromosomal DNA demethylation specified by protein binding
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21 January 2018
Protein binding protects sites on stable episomes and in the chromosome from de novo methylation
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Crossref
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21 January 2018
Plant DNA methyltransferases.
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21 January 2018
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
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21 January 2018
Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.
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Crossref
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21 January 2018
C(m)C(a/t)GG methylation: a new epigenetic mark in mammalian DNA?
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21 January 2018
DNA demethylation
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21 January 2018
Local DNA demethylation in vertebrates: how could it be performed and targeted?
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21 January 2018
Active demethylation of the paternal genome in the mouse zygote
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Crossref
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21 January 2018
Epigenetic reprogramming in mammalian development
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21 January 2018
Genomic imprinting disrupted by a maternal effect mutation in the Dnmt1 gene.
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21 January 2018
Instability and decay of the primary structure of DNA
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21 January 2018
The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA
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Crossref
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21 January 2018
High frequency mutagenesis by a DNA methyltransferase
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21 January 2018
Cytosine deaminations catalyzed by DNA cytosine methyltransferases are unlikely to be the major cause of mutational hot spots at sites of cytosine methylation in Escherichia coli
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21 January 2018
A cytosine methyltransferase converts 5-methylcytosine in DNA to thymine.
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Crossref
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21 January 2018
Reduced rates of gene loss, gene silencing, and gene mutation in Dnmt1-deficient embryonic stem cells.
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21 January 2018
Human DNA repair genes
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21 January 2018
Functional expression of soluble human interleukin-11 (IL-11) receptor alpha and stoichiometry of in vitro IL-11 receptor complexes with gp130
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21 January 2018
Vestiges of a DNA methylation system in Drosophila melanogaster?
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21 January 2018
Purification of CpG islands using a methylated DNA binding column
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Crossref
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21 January 2018
The essentials of DNA methylation
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21 January 2018
Analysis of CpG suppression in methylated and nonmethylated species
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21 January 2018
The role of DNA methylation in cancer genetic and epigenetics
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21 January 2018
How does DNA methylation repress transcription?
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21 January 2018
DNA methylation: a molecular lock
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21 January 2018
The sins of the fathers and mothers: genomic imprinting in mammalian development.
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21 January 2018
Genomic imprinting: parental influence on the genome
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21 January 2018
Role for DNA methylation in genomic imprinting
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21 January 2018
The genome sequence of Drosophila melanogaster
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21 January 2018
Genomic imprinting. Silence across the border.
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21 January 2018
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
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21 January 2018
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
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21 January 2018
X-chromosome inactivation: counting, choice and initiation
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21 January 2018
Aberrant methylation of donor genome in cloned bovine embryos.
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21 January 2018
Loss of methylation activates Xist in somatic but not in embryonic cells
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21 January 2018
DNA hypomethylation can activate Xist expression and silence X-linked genes.
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Crossref
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21 January 2018
Interspersed repeats and other mementos of transposable elements in mammalian genomes
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21 January 2018
Cytosine methylation and the ecology of intragenomic parasites
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21 January 2018
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
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21 January 2018
Loss of genomic methylation causes p53-dependent apoptosis and epigenetic deregulation
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21 January 2018
DNA hypomethylation leads to elevated mutation rates
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21 January 2018
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
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21 January 2018
Diversity of homology-dependent gene silencing strategies in fungi
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21 January 2018
RNA interference and small interfering RNAs
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21 January 2018
RNA-directed DNA methylation.
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21 January 2018
Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates
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21 January 2018
A vicious cycle: RNA silencing and DNA methylation in plants
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21 January 2018
Nonmethylated transposable elements and methylated genes in a chordate genome.
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21 January 2018
Gene number, noise reduction and biological complexity
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21 January 2018
DNA of Drosophila melanogaster contains 5-methylcytosine
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21 January 2018
DNA methylation in Drosophila melanogaster.
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21 January 2018
X inactivation, differentiation, and DNA methylation
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21 January 2018
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
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21 January 2018
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
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21 January 2018
Cis-elements required for the demethylation of the mouse M-lysozyme downstream enhancer
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21 January 2018
Repression of the mouse M-lysozyme gene involves both hindrance of enhancer factor binding to the methylated enhancer and histone deacetylation
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Crossref
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21 January 2018
Glucocorticoid-induced DNA demethylation and gene memory during development
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21 January 2018
Cytosine methylation and human cancer
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Crossref
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21 January 2018
DNA hypermethylation in tumorigenesis: epigenetics joins genetics
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21 January 2018
Enhancement of cellulose production by expression of sucrose synthase in Acetobacter xylinum
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21 January 2018
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
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Crossref
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21 January 2018
Methyl-CpG-binding proteins. Targeting specific gene repression.
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21 January 2018
Enzymatic properties of recombinant Dnmt3a DNA methyltransferase from mouse: the enzyme modifies DNA in a non-processive manner and also methylates non-CpG [correction of non-CpA] sites
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Crossref
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21 January 2018
Methylation of genomes and genes at the invertebrate-vertebrate boundary
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Crossref
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21 January 2018
A short DNA methyltransferase isoform restores methylation in vivo.
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Crossref
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21 January 2018
Two major forms of DNA (cytosine-5) methyltransferase in human somatic tissues
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Crossref
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21 January 2018
Characterization of the human DNA methyltransferase splice variant Dnmt1b
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Crossref
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21 January 2018
Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells
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Crossref
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21 January 2018
DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase
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Crossref
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21 January 2018
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei
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Crossref
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21 January 2018
Peptide mapping of the murine DNA methyltransferase reveals a major phosphorylation site and the start of translation
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Crossref
reference URL
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21 January 2018
Characterisation of independent DNA and multiple Zn-binding domains at the N terminus of human DNA-(cytosine-5) methyltransferase: modulating the property of a DNA-binding domain by contiguous Zn-binding motifs.
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Crossref
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21 January 2018
Multiple domains are involved in the targeting of the mouse DNA methyltransferase to the DNA replication foci
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Crossref
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21 January 2018
Human DNA-(Cytosine-5) Methyltransferase-PCNA Complex as a Target for p21WAF1
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Crossref
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21 January 2018
DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci
1 reference
stated in
Crossref
reference URL
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21 January 2018
DNA methyltransferase Dnmt1 associates with histone deacetylase activity
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Crossref
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21 January 2018
DNMT1 forms a complex with Rb, E2F1 and HDAC1 and represses transcription from E2F-responsive promoters
1 reference
stated in
Crossref
reference URL
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21 January 2018
Control of methylation spreading in synthetic DNA sequences by the murine DNA methyltransferase
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Crossref
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21 January 2018
Murine DNA cytosine-C5 methyltransferase: pre-steady- and steady-state kinetic analysis with regulatory DNA sequences
1 reference
stated in
Crossref
reference URL
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retrieved
21 January 2018
Recombinant human DNA (cytosine-5) methyltransferase. I. Expression, purification, and comparison of de novo and maintenance methylation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
retrieved
21 January 2018
The activity of the murine DNA methyltransferase Dnmt1 is controlled by interaction of the catalytic domain with the N-terminal part of the enzyme leading to an allosteric activation of the enzyme after binding to methylated DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Role of DNA 5-methylcytosine transferase in cell transformation by fos
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Crossref
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21 January 2018
Loss of the maintenance methyltransferase, xDnmt1, induces apoptosis in Xenopus embryos
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Inhibition of DNA methyltransferase inhibits DNA replication
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Mouse DNA methyltransferase (MTase) deletion mutants that retain the catalytic domain display neither de novo nor maintenance methylation activity in vivo.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Structure and function of the mouse DNA methyltransferase gene: Dnmt1 shows a tripartite structure
1 reference
stated in
Crossref
reference URL
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21 January 2018
Recombinant human DNA (cytosine-5) methyltransferase. II. Steady-state kinetics reveal allosteric activation by methylated dna.
1 reference
stated in
Crossref
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21 January 2018
The establishment and maintenance of DNA methylation patterns in mouse somatic cells
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stated in
Crossref
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21 January 2018
A candidate mammalian DNA methyltransferase related to pmt1p of fission yeast
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stated in
Crossref
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21 January 2018
Cloning and analysis of a novel human putative DNA methyltransferase
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Crossref
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21 January 2018
Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA
1 reference
stated in
Crossref
reference URL
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21 January 2018
Dnmt2 is not required for de novo and maintenance methylation of viral DNA in embryonic stem cells
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
The fission yeast gene pmt1+ encodes a DNA methyltransferase homologue
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Activation of a yeast pseudo DNA methyltransferase by deletion of a single amino acid.
1 reference
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Crossref
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21 January 2018
Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors
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Crossref
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21 January 2018
Enzymatic properties of de novo-type mouse DNA (cytosine-5) methyltransferases
1 reference
stated in
Crossref
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21 January 2018
Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription
1 reference
stated in
Crossref
reference URL
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21 January 2018
In vivo activity of murine de novo methyltransferases, Dnmt3a and Dnmt3b
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Crossref
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21 January 2018
Mammalian (cytosine-5) methyltransferases cause genomic DNA methylation and lethality in Drosophila.
1 reference
stated in
Crossref
reference URL
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21 January 2018
DNA methylation and epigenetic inheritance in plants and filamentous fungi
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stated in
Crossref
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21 January 2018
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.
1 reference
stated in
Crossref
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https://api.crossref.org/works/10.1002%2F1439-7633%2820020402%293%3A4%3C274%3A%3AAID-CBIC274%3E3.0.CO%3B2-S
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21 January 2018
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
1 reference
stated in
Crossref
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21 January 2018
Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation
1 reference
stated in
Crossref
reference URL
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21 January 2018
Hypermethylated SUPERMAN epigenetic alleles in arabidopsis
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Crossref
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21 January 2018
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations
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stated in
Crossref
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21 January 2018
An epigenetic mutation responsible for natural variation in floral symmetry
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stated in
Crossref
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21 January 2018
DNA from Aspergillus flavus contains 5-methylcytosine
1 reference
stated in
Crossref
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21 January 2018
dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora
1 reference
stated in
Crossref
reference URL
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21 January 2018
A gene essential for de novo methylation and development in Ascobolus reveals a novel type of eukaryotic DNA methyltransferase structure
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Crossref
reference URL
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21 January 2018
Masc2, a C5-DNA-methyltransferase from Ascobolus immersus with similarity to methyltransferases of higher organisms
1 reference
stated in
Crossref
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21 January 2018
Masc2, a gene from Ascobolus encoding a protein with a DNA-methyltransferase activity in vitro, is dispensable for in vivo methylation.
1 reference
stated in
Crossref
reference URL
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21 January 2018
Expression of antisense to DNA methyltransferase mRNA induces DNA demethylation and inhibits tumorigenesis
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stated in
Crossref
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21 January 2018
Inhibition of tumorigenesis by a cytosine-DNA, methyltransferase, antisense oligodeoxynucleotide
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stated in
Crossref
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21 January 2018
Nuclear cloning and epigenetic reprogramming of the genome
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stated in
Crossref
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21 January 2018
CTCF, a candidate trans-acting factor for X-inactivation choice
1 reference
stated in
Crossref
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21 January 2018
Genetics. Do X chromosomes set boundaries?
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Crossref
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21 January 2018
The amazing demethylase
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stated in
Crossref
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21 January 2018
Growing Y-junction carbon nanotubes
1 reference
stated in
Crossref
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retrieved
21 January 2018
Identifiers
DOI
10.1002/1439-7633(20020402)3:4<274::AID-CBIC274>3.0.CO;2-S
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
PubMed ID
11933228
1 reference
stated in
Europe PubMed Central
PubMed ID
11933228
retrieved
3 August 2017
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