(Q34651301)

3 August 2017

1 reference

title

Viral RNA pseudoknots: versatile motifs in gene expression and replication (English)

1 reference

3 August 2017

Ian Brierley

1

1 reference

3 August 2017

Simon Pennell

series ordinal

2

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3 August 2017

Robert J C Gilbert

series ordinal

3

1 reference

3 August 2017

language of work or name

English

0 references

publication date

1 August 2007

1 reference

Nature Reviews Microbiology

3 August 2017

published in

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3 August 2017

volume

5

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3 August 2017

issue

8

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3 August 2017

page(s)

598-610

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Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer

3 August 2017

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31 March 2020

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Pseudoknots: a new motif in the RNA game

31 March 2020

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Structural and functional aspects of RNA pseudoknots

31 March 2020

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Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

31 March 2020

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Novel features in the tRNA-like world of plant viral RNAs

31 March 2020

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Molecular biology. Versatility of self-cleaving ribozymes

31 March 2020

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Structure and function of telomerase RNA

31 March 2020

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Bypassing translation initiation

31 March 2020

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31 March 2020

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RNA pseudoknots: translational frameshifting and readthrough on viral RNAs

31 March 2020

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The frameshift stimulatory signal of human immunodeficiency virus type 1 group O is a pseudoknot

31 March 2020

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31 March 2020

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31 March 2020

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Candidates for novel RNA topologies

31 March 2020

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NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA

31 March 2020

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tRNA-like structures. Structure, function and evolutionary significance

31 March 2020

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Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency

31 March 2020

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Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function

31 March 2020

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Structure of the ribosome-bound cricket paralysis virus IRES RNA.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

31 March 2020

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Translation initiation: structures, mechanisms and evolution

31 March 2020

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Circularization of mRNA by eukaryotic translation initiation factors

31 March 2020

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Internal initiation: IRES elements of picornaviruses and hepatitis c virus

31 March 2020

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Translational control in positive strand RNA plant viruses

31 March 2020

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Structural and mechanistic insights into hepatitis C viral translation initiation

31 March 2020

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Mechanism of ribosome recruitment by hepatitis C IRES RNA

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO1704

The pathway of HCV IRES-mediated translation initiation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural roles for human translation factor eIF3 in initiation of protein synthesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Initiation of protein synthesis from the A site of the ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Crystal structure of the ribosome at 5.5 A resolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Tertiary Motifs in RNA Structure and Folding

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Unusual mRNA pseudoknot structure is recognized by a protein translational repressor

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Translational repression of the Escherichia coli alpha operon mRNA: importance of an mRNA conformational switch and a ternary entrapment complex

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Programmed ribosomal frameshifting in HIV-1 and the SARS-CoV.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Ribosomal frameshifting on viral RNAs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A second, non-canonical RNA-dependent RNA polymerase in SARS Coronavirus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Programmed ribosomal frameshifting in decoding the SARS-CoV genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The path of messenger RNA through the ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The 9-A solution: how mRNA pseudoknots promote efficient programmed -1 ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Torsional restraint: a new twist on frameshifting pseudoknots

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

mRNA helicase activity of the ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Regulation of eukaryotic translation by the RACK1 protein: a platform for signalling molecules on the ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: a mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Identification and characterisation of a developmentally regulated mammalian gene that utilises -1 programmed ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Characterization of the frameshift signal of Edr, a mammalian example of programmed -1 ribosomal frameshifting

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A functional -1 ribosomal frameshift signal in the human paraneoplastic Ma3 gene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

NMR structure of the Aquifex aeolicus tmRNA pseudoknot PK1: new insights into the recoding event of the ribosomal trans-translation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The tmRNA system for translational surveillance and ribosome rescue.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Ribosomal frameshifting in decoding antizyme mRNAs from yeast and protists to humans: close to 300 cases reveal remarkable diversity despite underlying conservation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed + 1 translational frameshifting in structural protein synthesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Evidence that a downstream pseudoknot is required for translational read-through of the Moloney murine leukemia virus gag stop codon

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Pseudoknot-dependent read-through of retroviral gag termination codons: importance of sequences in the spacer and loop 2

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural studies of the RNA pseudoknot required for readthrough of the gag-termination codon of murine leukemia virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Reverse transcriptase of Moloney murine leukemia virus binds to eukaryotic release factor 1 to modulate suppression of translational termination

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Enzymatic binding of valine to the 3' end of TYMV-RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Interplay of tRNA-like structures from plant viral RNAs with partners of the translation and replication machineries

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3'-translational enhancer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Cap- and initiator tRNA-dependent initiation of TYMV polyprotein synthesis by ribosomes: evaluation of the Trojan horse model for TYMV RNA translation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Possible mechanism for transition of viral RNA from polysome to replication complex

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Switch from translation to RNA replication in a positive-stranded RNA virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Specific site selection in RNA resulting from a combination of nonspecific secondary structure and -CCR- boxes: initiation of minus strand synthesis by turnip yellow mosaic virus RNA-dependent RNA polymerase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

eEF1A binding to aminoacylated viral RNA represses minus strand synthesis by TYMV RNA-dependent RNA polymerase.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Packaging of brome mosaic virus RNA3 is mediated through a bipartite signal

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Eukaryotic elongation factor 1A interacts with the upstream pseudoknot domain in the 3' untranslated region of tobacco mosaic virus RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Tobamovirus infection is independent of HSP101 mRNA induction and protein expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural properties of a multifunctional T-shaped RNA domain that mediate efficient tomato bushy stunt virus RNA replication

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

5'-3' RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mrna: a potential common mechanism for tombusviridae

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Analysis of a 3'-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA termini

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Crystal structure of a hepatitis delta virus ribozyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

An emerging consensus for telomerase RNA structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Reconstitution of human telomerase activity and identification of a minimal functional region of the human telomerase RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A molecular switch underlies a human telomerase disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Mutations linked to dyskeratosis congenita cause changes in the structural equilibrium in telomerase RNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Specific Association of Human Telomerase Activity with Immortal Cells and Cancer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Telomerase activity in Kaposi's sarcoma, squamous cell carcinoma, and basal cell carcinoma.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The RNA subunit of telomerase is encoded by Marek's disease virus

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A virus-encoded telomerase RNA promotes malignant T cell lymphomagenesis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Telomerase flies the coop: the telomerase RNA component as a viral-encoded oncogene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

RNA pseudoknots. Stability and loop size requirements

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A long-range pseudoknot in Qbeta RNA is essential for replication

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Inhibition, escape, and attenuated growth of severe acute respiratory syndrome coronavirus treated with antisense morpholino oligomers

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Prediction of RNA secondary structure by free energy minimization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

RNA pseudoknot prediction in energy-based models

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Bridging the gap in RNA structure prediction.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

HIV-1 reverse transcriptase-pseudoknot RNA aptamer interaction has a binding affinity in the low picomolar range coupled with high specificity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Endogenous expression of a high-affinity pseudoknot RNA aptamer suppresses replication of HIV-1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Differential susceptibility of HIV-1 reverse transcriptase to inhibition by RNA aptamers in enzymatic reactions monitoring specific steps during genome replication

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

The structure of HIV-1 reverse transcriptase complexed with an RNA pseudoknot inhibitor

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Structural characterization of a 2'F-RNA aptamer that binds a HIV-1 SU glycoprotein, gp120.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

RNA structure: reading the ribosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1704

Mutational analysis of the pseudoknot region in the 3' noncoding region of tobacco mosaic virus RNA.

31 March 2020

1 reference

12 December 2020

A central pseudoknotted three-way junction imposes tRNA-like mimicry and the orientation of three 5' upstream pseudoknots in the 3' terminus of tobacco mosaic virus RNA.

1 reference

12 December 2020

New developments in structure determination of pseudoknots

1 reference

12 December 2020

Minimal template requirements for initiation of minus-strand synthesis in vitro by the RNA-dependent RNA polymerase of turnip yellow mosaic virus

1 reference

12 December 2020

An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5' noncoding region

1 reference

12 December 2020

Three-dimensional models of the tRNA-like 3' termini of some plant viral RNAs

1 reference

12 December 2020

Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagation

2 references

12 December 2020

https://api.crossref.org/works/10.1038%2FNRMICRO1704

7 January 2021

inferred from DOI database lookup

A functional pseudoknot in 16S ribosomal RNA

1 reference

12 December 2020

RNA aptamers that bind the nucleocapsid protein contain pseudoknots

1 reference

12 December 2020

Bipartite signal for read-through suppression in murine leukemia virus mRNA: an eight-nucleotide purine-rich sequence immediately downstream of the gag termination codon followed by an RNA pseudoknot

1 reference

12 December 2020

Structure and replication of hepatitis delta virus RNA.

1 reference

12 December 2020

Translating ribosomes inhibit poliovirus negative-strand RNA synthesis.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRMICRO1704

1 reference

Dimensions Publication ID

3 August 2017

1044426532

0 references

PMC publication ID

7096944

0 references

1 reference