(Q34691405)

4 August 2017

1 reference

title

Predicting functional divergence in protein evolution by site-specific rate shifts (English)

1 reference

4 August 2017

0 references

Steven A Benner

4

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author name string

Eric A Gaucher

series ordinal

1

1 reference

PubMed ID

12069792

4 August 2017

Xun Gu

series ordinal

2

1 reference

PubMed ID

12069792

4 August 2017

Michael M Miyamoto

series ordinal

3

1 reference

4 August 2017

1 June 2002

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4 August 2017

7

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Trends in Biochemical Sciences

inferred from page(s)

published in

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4 August 2017

27

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4 August 2017

315-321

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4 August 2017

6

1 reference

Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life

4 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Patterns of divergence in homologous proteins as indicators of tertiary and quaternary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Evolution, language and analogy in functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Statistical methods for testing functional divergence after gene duplication

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The promise of comparative genomics in mammals

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Protein function in the post-genomic era.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Sequence interpretation. Making sense of the sequence.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Phylogenetic systematics turns over a new leaf

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Initial sequencing and analysis of the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The Sequence of the Human Genome

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Statistical methods for detecting molecular adaptation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Fitting Discrete Probability Distributions to Evolutionary Events

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Among-site rate variation and its impact on phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Maximum-likelihood approach for gene family evolution under functional divergence.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The superoxide dismutase molecular clock revisited

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Modeling the covarion hypothesis of nucleotide substitution.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The root of the tree of life in the light of the covarion model.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Maximum-likelihood phylogenetic analysis under a covarion-like model.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The crystal structure of eEF1A refines the functional predictions of an evolutionary analysis of rate changes among elongation factors

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Heterotachy, an important process of protein evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The structural basis of molecular adaptation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Analysis of heregulin symmetry by weighted evolutionary tracing

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Sequence and structural aspects of functional diversification in class I alpha-mannosidase evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Differential selection after duplication in mammalian developmental genes.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Detecting Changes in the Functional Constraints of Paralogous Genes

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Identification of an actin-binding protein from Dictyostelium as elongation factor 1a.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Apoptosis rate can be accelerated or decelerated by overexpression or reduction of the level of elongation factor-1 alpha

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Caspases: killer proteases

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Analysis of amino acid substitution during divergent evolution: the 400 by 400 dipeptide substitution matrix.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Exploring a phylogenetic approach for the detection of correlated substitutions in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Coevolving protein residues: maximum likelihood identification and relationship to structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Models of protein sequence evolution and their applications.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

The Nearly Neutral Theory of Molecular Evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

Taking variation of evolutionary rates between sites into account in inferring phylogenies

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0004%2802%2902094-7

7 January 2021

10.1016/S0968-0004(02)02094-7

Identifiers

DOI

1 reference

4 August 2017

1 reference

PubMed ID

12069792