Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q34975999)
Watch
English
Design of protein-interaction specificity gives selective bZIP-binding peptides.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
title
Design of protein-interaction specificity gives selective bZIP-binding peptides
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
main subject
protein design
0 references
author
Amy Keating
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
author name string
Gevorg Grigoryan
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
Aaron W Reinke
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
language of work or name
English
0 references
publication date
1 April 2009
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
published in
Nature
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
volume
458
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
page(s)
859-864
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
issue
7240
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
exact match
https://scigraph.springernature.com/pub.10.1038/nature07885
0 references
cites work
Cluster expansion models for flexible-backbone protein energetics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Macromolecular modeling with rosetta
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Preferred side-chain constellations at antiparallel coiled-coil interfaces
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
PDZ domain binding selectivity is optimized across the mouse proteome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xL.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Positive aspects of negative design: simultaneous selection of specificity and interaction stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Potential energy functions for protein design.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Ultra-fast evaluation of protein energies directly from sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Designed tumor necrosis factor-related apoptosis-inducing ligand variants initiating apoptosis exclusively via the DR5 receptor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Deciphering B-ZIP transcription factor interactions in vitro and in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
A quantitative protein interaction network for the ErbB receptors using protein microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Specificity versus stability in computational protein design
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Ab initio prediction of transcription factor targets using structural knowledge
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
The structure of alpha-helical coiled coils
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Solving and analyzing side-chain positioning problems using linear and integer programming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Predicting specificity in bZIP coiled-coil protein interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Protein interaction networks by proteome peptide scanning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Exploring the origins of binding specificity through the computational redesign of calmodulin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Comprehensive identification of human bZIP interactions with coiled-coil arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
New algorithm for protein design.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Extending dimerization interfaces: the bZIP basic region can form a coiled coil.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
8 July 2018
Computational design of peptides that target transmembrane helices.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Activator protein-1 activity regulates epithelial tumor cell identity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Structure-based prediction of bZIP partnering specificity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Coarse-graining protein energetics in sequence variables.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Design of a heterospecific, tetrameric, 21-residue miniprotein with mixed alpha/beta structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Computational redesign of protein-protein interaction specificity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Automated design of specificity in molecular recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Computer-aided design of a PDZ domain to recognize new target sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Inter-helical interactions in the leucine zipper coiled coil dimer: pH and salt dependence of coupling energy between charged amino acids.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2748673
retrieved
26 October 2018
Stability of 100 homo and heterotypic coiled-coil a-a' pairs for ten amino acids (A, L, I, V, N, K, S, T, E, and R)
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19370028
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/NATURE07885
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
Dimensions Publication ID
1001761618
0 references
Fatcat ID
release_fvuxwmcdtrdgvac4pv77zxcnvm
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/fvuxwmcdtrdgvac4pv77zxcnvm
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMCID
2748673
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
PubMed ID
19370028
1 reference
stated in
Europe PubMed Central
PMCID
2748673
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19370028%20AND%20SRC:MED&resulttype=core&format=json
retrieved
26 January 2020
ResearchGate publication ID
24281053
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit