(Q34977392)

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Ribosomal gene promoter domains can function as artificial enhancers of RNA polymerase I transcription, supporting a promoter origin for natural enhancers in Xenopus

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scholarly article

1 reference

Europe PubMed Central

5 August 2017

Ribosomal gene promoter domains can function as artificial enhancers of RNA polymerase I transcription, supporting a promoter origin for natural enhancers in Xenopus (English)

1 reference

Europe PubMed Central

5 August 2017

1

object named as

C S Pikaard

1 reference

Europe PubMed Central

5 August 2017

language of work or name

0 references

publication date

1 January 1994

1 reference

Europe PubMed Central

5 August 2017

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

5 August 2017

91

1 reference

Europe PubMed Central

5 August 2017

464-468

1 reference

Europe PubMed Central

5 August 2017

2

1 reference

Europe PubMed Central

5 August 2017

Recognition of the Xenopus ribosomal core promoter by the transcription factor xUBF involves multiple HMG box domains and leads to an xUBF interdomain interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Functional analysis of Arabidopsis thaliana rRNA gene and spacer promoters in vivo and by transient expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Molecular drive: a cohesive mode of species evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Nontranscribed spacer sequences promote in vitro transcription of Drosophila ribosomal DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

DNaseI-hypersensitive sites at promoter-like sequences in the spacer of Xenopus laevis and Xenopus borealis ribosomal DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Nucleotide sequence of the genetically labile repeated elements 5′ to the origin of mouse rRNA transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Multiple Pol I initiation sequences in rDNA spacers ofDrosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Sequence organization of the spacer in the ribosomal genes of Xenopus clivii and Xenopus borealis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Mechanisms of nucleolar dominance in animals and plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Purification and characterization of a transcription factor that confers promoter specificity to human RNA polymerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Factors and nucleotide sequences that direct ribosomal DNA transcription and their relationship to the stable transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Upstream domains of the Xenopus laevis rDNA promoter are revealed in microinjected oocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Linker scanner mutagenesis of the Xenopus laevis ribosomal gene promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Additional RNA polymerase I initiation site within the nontranscribed spacer region of the rat rRNA gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

A purified transcription factor (TIF-IB) binds to essential sequences of the mouse rDNA promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

DNA sequences for typical ribosomal gene spacers from Xenopus laevis and Xenopus borealis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Characterization of three sites of RNA 3' end formation in the Xenopus ribosomal gene spacer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

A novel promoter in the mouse rDNA spacer is active in vivo and in vitro.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Functional Cooperativity Between Transcription Factors UBF1 and SL1 Mediates Human Ribosomal RNA Synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Sequence elements essential for function of the Xenopus laevis ribosomal DNA enhancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Transcriptional role for the nontranscribed spacer of rat ribosomal DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Multiple repeated units in Drosophila melanogaster ribosomal DNA spacer stimulate rRNA precursor transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Molecular mechanisms governing species-specific transcription of ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Nucleotide sequence of the 25S-18S ribosomal gene spacer from Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

An RNA polymerase I promoter located in the CHO and mouse ribosomal DNA spacers: functional analysis and factor and sequence requirements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Regulatory elements of the generic ribosomal gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

A 37-base pair element in the far upstream spacer region can enhance transcription of rat rDNA in vitro and can bind to the core promoter-binding factor(s).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

The Xenopus ribosomal DNA 60- and 81-base-pair repeats are position-dependent enhancers that function at the establishment of the preinitiation complex: analysis in vivo and in an enhancer-responsive in vitro system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

The promoters and spacers in the rDNAs of the melanogaster species subgroup of Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Enhancers for RNA polymerase I in mouse ribosomal DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Assembly of alternative multiprotein complexes directs rRNA promoter selectivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

rUBF, an RNA polymerase I transcription factor from rats, produces DNase I footprints identical to those produced by xUBF, its homolog from frogs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Characterization of factors that direct transcription of rat ribosomal DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

A 140-base-pair repetitive sequence element in the mouse rRNA gene spacer enhances transcription by RNA polymerase I in a cell-free system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Spacer promoters are orientation-dependent activators of pre-rRNA transcription in Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

xUBF and Rib 1 are both required for formation of a stable polymerase I promoter complex in X. laevis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

The RNA polymerase I transcription factor xUBF contains 5 tandemly repeated HMG homology boxes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Identification of two forms of the RNA polymerase I transcription factor UBF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Cloning and structural analysis of cDNA and the gene for mouse transcription factor UBF

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Transcription complex formation at the mouse rDNA promoter involves the stepwise association of four transcription factors and RNA polymerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

rDNA intergenic region from Arabidopsis thaliana. Structural analysis, intraspecific variation and functional implications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Dual role of the nucleolar transcription factor UBF: trans-activator and antirepressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Cooperative binding of the Xenopus RNA polymerase I transcription factor xUBF to repetitive ribosomal gene enhancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

The putative promoter of a Xenopus laevis ribosomal gene is reduplicated

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Sequence organization of the spacer DNA in a ribosomal gene unit of Xenopus laevis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

8 July 2018

Nested control regions promote Xenopus ribosomal RNA synthesis by RNA polymerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=42969

26 October 2018

Molecular coevolution: DNA divergence and the maintenance of function

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human rRNA transcription is modulated by the coordinate binding of two factors to an upstream control element

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the 130-bp repeat enhancer element of the rat ribosomal gene: functional interaction with transcription factor E1BF

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A transcriptional function for the repetitive ribosomal spacer in Xenopus laevis

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spacer sequences regulate transcription of ribosomal gene plasmids injected into Xenopus embryos

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spacer regulation of Xenopus ribosomal gene transcription: competition in oocytes

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mechanism of nucleolar dominance in Xenopus hybrids

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancers and ribosomal gene spacers

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An enhancer element in the far upstream spacer region of rat ribosomal RNA gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A cis-acting sequence within the rat ribosomal DNA enhancer region can modulate RNA polymerase II-directed transcription of the metallothionein I gene in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBF

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific binding of a transcription factor TFID to the promoter region of mouse ribosomal RNA gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/8290549

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.91.2.464

1 reference

Europe PubMed Central

5 August 2017

1994PNAS...91..464P

0 references

1 reference

Europe PubMed Central

5 August 2017

1 reference

Europe PubMed Central

5 August 2017

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