(Q35001999)

5 August 2017

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title

The logic of chromatin architecture and remodelling at promoters (English)

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5 August 2017

Bradley R Cairns

1

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PubMed ID

19741699

5 August 2017

language of work or name

English

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publication date

1 September 2009

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5 August 2017

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5 August 2017

461

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5 August 2017

193-198

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5 August 2017

7261

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https://scigraph.springernature.com/pub.10.1038/nature08450

5 August 2017

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cites work

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12 December 2020

A high-resolution atlas of nucleosome occupancy in yeast

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Two strategies for gene regulation by promoter nucleosomes

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Acetylation of H2AZ Lys 14 is associated with genome-wide gene activity in yeast

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12 December 2020

Genome-scale identification of nucleosome positions in S. cerevisiae

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12 December 2020

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

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Nucleosome positions predicted through comparative genomics

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Modulation of ISWI function by site-specific histone acetylation

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

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Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

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Identification and distinct regulation of yeast TATA box-containing genes.

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12 December 2020

Transcription elongation factors repress transcription initiation from cryptic sites.

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Chromatin decouples promoter threshold from dynamic range

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Nucleosome organization in the Drosophila genome.

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12 December 2020

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

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Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

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Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant

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Dynamics of Replication-Independent Histone Turnover in Budding Yeast

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Nucleosome mobilization catalysed by the yeast SWI/SNF complex

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Control of stochasticity in eukaryotic gene expression

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Chromatin remodeling by nuclear receptors

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ATP-dependent nucleosome remodeling

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A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

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ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

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Nucleosome positioning and gene regulation: advances through genomics

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

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12 December 2020

Mechanisms that specify promoter nucleosome location and identity

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12 December 2020

Chromatin remodelling at promoters suppresses antisense transcription

1 reference

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High-resolution profiling of histone methylations in the human genome

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12 December 2020

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

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Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

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Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

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Nucleosome destabilization in the epigenetic regulation of gene expression

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Evidence for nucleosome depletion at active regulatory regions genome-wide

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Global nucleosome occupancy in yeast

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Histone octamer transfer by a chromatin-remodeling complex

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A genomic code for nucleosome positioning

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

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RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes

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New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

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A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

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The Saccharomyces cerevisiae histone H2A variant Htz1 is acetylated by NuA4.

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Cooperation between complexes that regulate chromatin structure and transcription

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Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling

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Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

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12 December 2020

ATP-dependent remodeling and acetylation as regulators of chromatin fluidity

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12 December 2020

Antagonistic forces that position nucleosomes in vivo.

1 reference

12 December 2020

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

1 reference

12 December 2020

Dynamic regulation of nucleosome positioning in the human genome

1 reference

12 December 2020

Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

1 reference

12 December 2020

Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1.

1 reference

12 December 2020

Chromatin remodelling: the industrial revolution of DNA around histones

1 reference

12 December 2020

Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

1 reference

12 December 2020

The role of chromatin during transcription

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE08450

1 reference

PubMed ID

19741699

Dimensions Publication ID

5 August 2017

0 references

1 reference

PubMed ID

19741699