(Q35008132)

5 August 2017

Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human (English)

1 reference

5 August 2017

0 references

4

Leszek Rychlewski

1 reference

5 August 2017

5

Krzysztof Ginalski

1 reference

5 August 2017

3

Lucjan S Wyrwicz

1 reference

5 August 2017

Krzysztof Kuchta

1

1 reference

PubMed ID

19833706

5 August 2017

Lukasz Knizewski

series ordinal

2

1 reference

PubMed ID

19833706

5 August 2017

language of work or name

English

0 references

publication date

1 December 2009

1 reference

5 August 2017

Nucleic Acids Research

1 reference

5 August 2017

37

1 reference

5 August 2017

7701-7714

1 reference

5 August 2017

22

1 reference

Genome pool strategy for structural coverage of protein families

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

STRING 8--a global view on proteins and their functional interactions in 630 organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

The Pfam protein families database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Genetic analysis of FAM46A in Spanish families with autosomal recessive retinitis pigmentosa: characterisation of novel VNTRs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Locating proteins in the cell using TargetP, SignalP and related tools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Dystroglycan: a possible mediator for reducing congenital muscular dystrophy?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Mendelian Inheritance in Man and its online version, OMIM

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Ancient origin of the new developmental superfamily DANGER

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

UTP-bound and Apo Structures of a Minimal RNA Uridylyltransferase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Structural insight into the substrate specificity of DNA Polymerase mu

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Characterization of Mmp37p, a Saccharomyces cerevisiae mitochondrial matrix protein with a role in mitochondrial protein import

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

NF45/ILF2 tissue expression, promoter analysis, and interleukin-2 transactivating function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

A closed conformation for the Pol lambda catalytic cycle.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

The congenital muscular dystrophies in 2004: a century of exciting progress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Detecting distant homology with Meta-BASIC.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Members of the NF90/NFAR protein group are involved in the life cycle of a positive-strand RNA virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

3D-Jury: a simple approach to improve protein structure predictions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Differential action of natural selection on the N and C-terminal domains of 2'-5' oligoadenylate synthetases and the potential nuclease function of the C-terminal domain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Isolation and characterization of a new nucleolar protein, Nrap, that is conserved from yeast to humans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Structure/function analysis of the Saccharomyces cerevisiae Trf4/Pol sigma DNA polymerase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Mutations in the fukutin-related protein gene (FKRP) cause a form of congenital muscular dystrophy with secondary laminin alpha2 deficiency and abnormal glycosylation of alpha-dystroglycan

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Postembryonic expression of Caenorhabditis elegans mab-21 and its requirement in sensory ray differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

8 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

The COG database: a tool for genome-scale analysis of protein functions and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Protein secondary structure prediction based on position-specific scoring matrices

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Pneumococcal licD2 gene is involved in phosphorylcholine metabolism.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Unstable expansion of the CAG trinucleotide repeat in MAB21L1: report of a second pedigree and effect on protein expression.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

SMART, a simple modular architecture research tool: identification of signaling domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Meiotic instability associated with the CAGR1 trinucleotide repeat at 13q13.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Decoration of lipopolysaccharide with phosphorylcholine: a phase-variable characteristic of Haemophilus influenzae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Protein fold recognition using sequence-derived predictions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Comparative protein modelling by satisfaction of spatial restraints

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Non-globular domains in protein sequences: automated segmentation using complexity measures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

SCOP: a structural classification of proteins database for the investigation of sequences and structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Structural investigation of the antibiotic and ATP-binding sites in kanamycin nucleotidyltransferase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Predicting coiled coils from protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

Structural basis for template-independent RNA polymerization.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Structure of the N-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Improvement of the GenTHREADER method for genomic fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

PCMA: fast and accurate multiple sequence alignment based on profile consistency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

DANGER, a novel regulatory protein of inositol 1,4,5-trisphosphate-receptor activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Identification and characterization of C6orf37, a novel candidate human retinal disease gene on chromosome 6q14.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Molecular genetics of human retinal dystrophies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Regulation of body length and male tail ray pattern formation of Caenorhabditis elegans by a member of TGF-beta family.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2794190

OAS1 Splice Site Polymorphism Controlling Antiviral Enzyme Activity Influences Susceptibility to Type 1 Diabetes

26 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP854

Mannosylphosphate transfer to yeast mannan

21 January 2018

1 reference

12 December 2020

The fukutin protein family--predicted enzymes modifying cell-surface molecules

1 reference

12 December 2020

Ilf3 and NF90 associate with the axonal targeting element of Tau mRNA

1 reference

12 December 2020

Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP854

1 reference

5 August 2017

1 reference

5 August 2017

1 reference

PubMed ID

19833706