(Q35030499)

5 August 2017

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster (English)

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5 August 2017

Drosophila melanogaster

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author

Richard Sandstrom

21

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5 August 2017

Andrey A Gorchakov

9

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Manolis Kellis

25

object named as

Manolis Kellis

1 reference

5 August 2017

John Stamatoyannopoulos

24

object named as

John A Stamatoyannopoulos

1 reference

5 August 2017

1

Peter V Kharchenko

1 reference

5 August 2017

29

Gary H Karpen

1 reference

5 August 2017

Artyom A Alekseyenko

2

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5 August 2017

Yuri B Schwartz

3

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5 August 2017

Aki Minoda

4

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5 August 2017

Nicole C Riddle

5

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5 August 2017

Jason Ernst

6

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5 August 2017

Peter J Sabo

7

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5 August 2017

Erica Larschan

8

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5 August 2017

Tingting Gu

10

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5 August 2017

Daniela Linder-Basso

11

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5 August 2017

Annette Plachetka

12

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5 August 2017

Gregory Shanower

13

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5 August 2017

Michael Y Tolstorukov

14

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5 August 2017

Lovelace J Luquette

15

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5 August 2017

Ruibin Xi

16

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5 August 2017

Youngsook L Jung

17

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5 August 2017

Richard W Park

18

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5 August 2017

Eric P Bishop

19

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5 August 2017

Theresa K Canfield

20

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5 August 2017

Robert E Thurman

22

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5 August 2017

David M MacAlpine

23

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5 August 2017

Sarah C R Elgin

26

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5 August 2017

Mitzi I Kuroda

27

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5 August 2017

Vincenzo Pirrotta

28

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5 August 2017

Peter J Park

30

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5 August 2017

language of work or name

English

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publication date

22 December 2010

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5 August 2017

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5 August 2017

471

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5 August 2017

480-485

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5 August 2017

7339

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https://scigraph.springernature.com/pub.10.1038/nature09725

5 August 2017

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cites work

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Identification of functional elements and regulatory circuits by Drosophila modENCODE

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

An assessment of histone-modification antibody quality

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Mediator and cohesin connect gene expression and chromatin architecture

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Discovery and characterization of chromatin states for systematic annotation of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Widespread transcription at neuronal activity-regulated enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Alternative epigenetic chromatin states of polycomb target genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Combinatorial binding predicts spatio-temporal cis-regulatory activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Visualization of genomic data with the Hilbert curve

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Histone modifications at human enhancers reflect global cell-type-specific gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Cellular mechanism for targeting heterochromatin formation in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

ChIP-seq accurately predicts tissue-specific activity of enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Genome-wide profiling of salt fractions maps physical properties of chromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

FlyBase: enhancing Drosophila Gene Ontology annotations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Polycomb complexes and epigenetic states

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Chromatin state maps: new technologies, new insights

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Evolution of genes and genomes on the Drosophila phylogeny

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Sequence finishing and mapping of Drosophila melanogaster heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

High-resolution profiling of histone methylations in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

The role of chromatin during transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Genome-wide analysis of Polycomb targets in Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Single-nucleosome mapping of histone modifications in S. cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Controlling the double helix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

The genome sequence of Drosophila melanogaster

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

The units of DNA replication in Drosophila melanogaster chromosomes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3109908

MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism.

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09725

Coordination of replication and transcription along a Drosophila chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09725

The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09725

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09725

The formation and function of DNase I hypersensitive sites in the process of gene activation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21179089

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE09725

1 reference

Dimensions Publication ID

5 August 2017

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1 reference

5 August 2017

1 reference