(Q35065302)

6 August 2017

title

Sequencing the transcriptome of milk production: milk trumps mammary tissue (English)

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6 August 2017

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9

Alma Islas-Trejo

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6 August 2017

Katie Hinde

4

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author name string

Danielle G Lemay

1

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6 August 2017

Russell C Hovey

2

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6 August 2017

Stella R Hartono

3

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6 August 2017

Jennifer T Smilowitz

5

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6 August 2017

Frank Ventimiglia

6

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6 August 2017

Kimberli A Schmidt

7

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6 August 2017

Joyce W S Lee

8

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6 August 2017

Pedro Ivo Silva

10

1 reference

6 August 2017

Ian Korf

11

1 reference

6 August 2017

Juan F Medrano

12

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6 August 2017

Peter A Barry

13

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6 August 2017

J Bruce German

14

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6 August 2017

language of work or name

English

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publication date

12 December 2013

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6 August 2017

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6 August 2017

volume

14

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6 August 2017

page(s)

872

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describes a project that uses

6 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3871720/fullTextXML

inferred from PubMed Central ID database lookup

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Milk yield responses to changes in milking frequency during early lactation are associated with coordinated and persistent changes in mammary gene expression

8 July 2018

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Transcriptome profiling of microRNA by Next-Gen deep sequencing reveals known and novel miRNA species in the lipid fraction of human breast milk

8 July 2018

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Identification of gene sets and pathways associated with lactation performance in mice

8 July 2018

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Metabolomic phenotyping validates the infant rhesus monkey as a model of human infant metabolism

8 July 2018

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Validation of RNA isolated from milk fat globules to profile mammary epithelial cell expression during lactation and transcriptional response to a bacterial infection

8 July 2018

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8 July 2018

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Old and new stories: revelations from functional analysis of the bovine mammary transcriptome during the lactation cycle

8 July 2018

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Transcriptional profiling of bovine milk using RNA sequencing

8 July 2018

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Glycosylation of human milk lactoferrin exhibits dynamic changes during early lactation enhancing its role in pathogenic bacteria-host interactions

8 July 2018

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8 July 2018

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8 July 2018

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Acute milk yield response to frequent milking during early lactation is mediated by genes transiently regulated by milk removal

8 July 2018

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Adipophilin regulates maturation of cytoplasmic lipid droplets and alveolae in differentiating mammary glands

8 July 2018

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Increased mortality in women with breast cancer detected during pregnancy and different periods postpartum

8 July 2018

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Comparative expression profiling of E. coli and S. aureus inoculated primary mammary gland cells sampled from cows with different genetic predispositions for somatic cell score

8 July 2018

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Determinants of adipophilin function in milk lipid formation and secretion

8 July 2018

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Transcriptome profiling of bovine milk oligosaccharide metabolism genes using RNA-sequencing

8 July 2018

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The Mammary Glands of Macaques

8 July 2018

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The adipophilin C terminus is a self-folding membrane-binding domain that is important for milk lipid secretion

8 July 2018

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8 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

8 July 2018

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Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response

8 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Differentiation of the mammary epithelial cell during involution: implications for breast cancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

TopHat: discovering splice junctions with RNA-Seq

8 July 2018

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8 July 2018

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Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome

8 July 2018

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Transcriptome analysis identifies pathways associated with enhanced maternal performance in QSi5 mice.

8 July 2018

1 reference

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Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation

8 July 2018

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Induction of autophagy during extracellular matrix detachment promotes cell survival

8 July 2018

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8 July 2018

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8 July 2018

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Combining mouse mammary gland gene expression and comparative mapping for the identification of candidate genes for QTL of milk production traits in cattle

8 July 2018

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Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis!

8 July 2018

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Pregnancy-associated breast cancer and metastasis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Potential uses of milk epithelial cells: a review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Incidence and characteristics of cell pieces on human milk fat globules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Keratin expression in human mammary epithelial cells cultured from normal and malignant tissue: relation to in vivo phenotypes and influence of medium.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Perilipin, a major hormonally regulated adipocyte-specific phosphoprotein associated with the periphery of lipid storage droplets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

RNA sequencing to study gene expression and single nucleotide polymorphism variation associated with citrate content in cow milk

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Database resources of the National Center for Biotechnology Information

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Technical note: A vacuum-assisted approach for biopsying the mammary glands of various species

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Richer milk for sons but more milk for daughters: Sex-biased investment during lactation varies with maternal life history in rhesus macaques

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Cause-specific survival for women diagnosed with cancer during pregnancy or lactation: a registry-based cohort study

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Regulation of gene expression in human mammary epithelium: effect of breast pumping

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Cytoplasmic lipid droplet accumulation in developing mammary epithelial cells: roles of adipophilin and lipid metabolism.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Metabolic regulation in the lactating mammary gland: a lipid synthesizing machine.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Functional development of the mammary gland: use of expression profiling and trajectory clustering to reveal changes in gene expression during pregnancy, lactation, and involution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Worse survival in breast cancer among women with recent childbirth: results from a Swedish population-based register study

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3871720

Use of somatic cells from goat milk for dynamic studies of gene expression in the mammary gland

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24330573

12 December 2020

inferred from PubMed ID database lookup

Increased promoter methylation in exfoliated breast epithelial cells in women with a previous breast biopsy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24330573

12 December 2020

inferred from PubMed ID database lookup

Origin, concentration and structural features of human mammary gland cells cultured from breast secretions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24330573

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-14-872

1 reference

6 August 2017

1 reference

6 August 2017

1 reference