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Genome-scale microbial in silico models: the constraints-based approach.
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Europe PubMed Central
PubMed ID
12679064
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
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2 November 2019
review article
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title
Genome-scale microbial in silico models: the constraints-based approach
(English)
1 reference
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Europe PubMed Central
PubMed ID
12679064
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
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2 November 2019
author
Nathan D Price
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1
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Europe PubMed Central
PubMed ID
12679064
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2 November 2019
Jason A. Papin
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2
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Europe PubMed Central
PubMed ID
12679064
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2 November 2019
Bernhard Palsson
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Bernhard O Palsson
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Europe PubMed Central
PubMed ID
12679064
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2 November 2019
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Christophe H Schilling
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12679064
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2 November 2019
publication date
1 April 2003
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Europe PubMed Central
PubMed ID
12679064
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2 November 2019
published in
Trends in Biotechnology
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Europe PubMed Central
PubMed ID
12679064
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
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2 November 2019
volume
21
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Europe PubMed Central
PubMed ID
12679064
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2 November 2019
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162-169
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Europe PubMed Central
PubMed ID
12679064
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
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2 November 2019
issue
4
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Europe PubMed Central
PubMed ID
12679064
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
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2 November 2019
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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
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The challenges of in silico biology
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Complex biology with no parameters
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Simulation of prokaryotic genetic circuits.
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Mathematical models of metabolic pathways
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Cybernetic modeling and regulation of metabolic pathways in multiple steady states of hybridoma cells
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Metabolic modelling of microbes: the flux-balance approach
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Metabolic modeling of microbial strains in silico.
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Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.
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Transcriptional regulation in constraints-based metabolic models of Escherichia coli
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Deciphering gene expression regulatory networks.
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Energy balance for analysis of complex metabolic networks
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Extreme pathways and Kirchhoff's second law.
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Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
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Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.
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Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions
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Minimal reaction sets for Escherichia coli metabolism under different growth requirements and uptake environments
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7 January 2021
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Analysis of optimality in natural and perturbed metabolic networks
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Characterizing the metabolic phenotype: a phenotype phase plane analysis
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7 January 2021
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inferred from DOI database lookup
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
1 reference
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7 January 2021
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inferred from DOI database lookup
The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities
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7 January 2021
based on heuristic
inferred from DOI database lookup
Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Systems properties of the Haemophilus influenzae Rd metabolic genotype
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-scale metabolic model of Helicobacter pylori 26695.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
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7 January 2021
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inferred from DOI database lookup
Toward metabolic phenomics: analysis of genomic data using flux balances
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Robustness analysis of the Escherichia coli metabolic network.
1 reference
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Crossref
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7 January 2021
based on heuristic
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Optimization-based framework for inferring and testing hypothesized metabolic objective functions.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Dynamic flux balance analysis of diauxic growth in Escherichia coli
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Analysis of carbon metabolism in Escherichia coli strains with an inactive phosphotransferase system by (13)C labeling and NMR spectroscopy
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Metabolic network structure determines key aspects of functionality and regulation
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Regulation of gene expression in flux balance models of metabolism
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0167-7799%2803%2900030-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0167-7799%2803%2900030-1
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7 January 2021
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inferred from DOI database lookup
Identifiers
DOI
10.1016/S0167-7799(03)00030-1
1 reference
stated in
Europe PubMed Central
PubMed ID
12679064
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 November 2019
PubMed ID
12679064
1 reference
stated in
Europe PubMed Central
PubMed ID
12679064
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12679064%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 November 2019
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