(Q35225247)

7 August 2017

title

Allele-specific distribution of RNA polymerase II on female X chromosomes (English)

1 reference

7 August 2017

Katerina S Kucera

1

1 reference

7 August 2017

Timothy E Reddy

2

1 reference

7 August 2017

Florencia Pauli

3

1 reference

7 August 2017

Jason Gertz

4

1 reference

7 August 2017

Jenae E Logan

5

1 reference

7 August 2017

Richard M Myers

6

1 reference

7 August 2017

Huntington F Willard

7

1 reference

7 August 2017

publication date

26 July 2011

1 reference

7 August 2017

published in

Human Molecular Genetics

1 reference

7 August 2017

volume

20

1 reference

7 August 2017

issue

20

1 reference

7 August 2017

page(s)

3964-3973

1 reference

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

7 August 2017

cites work

1 reference

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13 July 2018

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13 July 2018

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

13 July 2018

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13 July 2018

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Variation in transcription factor binding among humans

13 July 2018

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Inactive X chromosome-specific histone H3 modifications and CpG hypomethylation flank a chromatin boundary between an X-inactivated and an escape gene

13 July 2018

1 reference

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Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling.

13 July 2018

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Monosomy for the X chromosome

13 July 2018

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Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

13 July 2018

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The logic of chromatin architecture and remodelling at promoters

13 July 2018

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Defining mechanisms that regulate RNA polymerase II transcription in vivo

13 July 2018

1 reference

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Genetics of human gene expression: mapping DNA variants that influence gene expression

13 July 2018

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High-resolution analysis of epigenetic changes associated with X inactivation.

13 July 2018

1 reference

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Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation

13 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

13 July 2018

1 reference

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RNA Pol II accumulates at promoters of growth genes during developmental arrest.

13 July 2018

1 reference

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Monoallelic gene expression in mammals.

13 July 2018

1 reference

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Weak but uniform enrichment of the histone variant macroH2A1 along the inactive X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Promoter proximal pausing on genes in metazoans

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Genome-wide RNA polymerase II: not genes only!

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Two strategies for gene regulation by promoter nucleosomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Widespread monoallelic expression on human autosomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

RNA polymerase is poised for activation across the genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A second generation human haplotype map of over 3.1 million SNPs

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Genomic imprinting effects on brain development and function

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

13 July 2018

X inactivation Xplained

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A chromatin landmark and transcription initiation at most promoters in human cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Genome-wide mapping of in vivo protein-DNA interactions

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

X chromosome-inactivation patterns of 1,005 phenotypically unaffected females

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Controlling the elongation phase of transcription with P-TEFb

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Dosage compensation in mammals: fine-tuning the expression of the X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Chromosome-wide, allele-specific analysis of the histone code on the human X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Histone modification patterns associated with the human X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Human chromosome 11 DNA sequence and analysis including novel gene identification

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A haplotype map of the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A high-resolution map of active promoters in the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

X-inactivation profile reveals extensive variability in X-linked gene expression in females

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

The DNA sequence of the human X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Wide genome comparisons reveal the origins of the human X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Gene action in the X-chromosome of the mouse (Mus musculus L.)

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A first-generation X-inactivation profile of the human X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Four evolutionary strata on the human X chromosome.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Polymorphic X-chromosome inactivation of the human TIMP1 gene.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Heterogeneous gene expression from the inactive X chromosome: an X-linked gene that escapes X inactivation in some human cell lines but is inactivated in others

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Expression of genes from the human active and inactive X chromosomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Direct detection of non-random X chromosome inactivation by use of a transcribed polymorphism in the XIST gene

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A synaptobrevin-like gene in the Xq28 pseudoautosomal region undergoes X inactivation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

The origin and function of the mammalian Y chromosome and Y-borne genes--an evolving understanding.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

The product of the H19 gene may function as an RNA

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

Moving AHEAD with an international human epigenome project.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3177651

CpG Islands in Human X-Inactivation

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21791549

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/HMG/DDR315

1 reference

7 August 2017

1 reference

7 August 2017

1 reference