(Q35709067)

9 August 2017

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes (English)

1 reference

9 August 2017

1 reference

Katsuyuki Shiroguchi

1

1 reference

9 August 2017

Tony Z Jia

series ordinal

2

1 reference

9 August 2017

Peter A Sims

series ordinal

3

1 reference

9 August 2017

X Sunney Xie

series ordinal

4

1 reference

9 August 2017

language of work or name

English

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publication date

9 January 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

9 August 2017

1 reference

9 August 2017

109

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9 August 2017

1347-1352

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9 August 2017

4

1 reference

Bias detection and correction in RNA-Sequencing data

9 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Barcoding bias in high-throughput multiplex sequencing of miRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Detection and quantification of rare mutations with massively parallel sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

A method for counting PCR template molecules with application to next-generation sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Nascent transcript sequencing visualizes transcription at nucleotide resolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

EcoCyc: a comprehensive database of Escherichia coli biology

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Amplification-free digital gene expression profiling from minute cell quantities

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

FRT-seq: amplification-free, strand-specific transcriptome sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

27 July 2018

Direct RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Quantification of the yeast transcriptome by single-molecule sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

mRNA-Seq whole-transcriptome analysis of a single cell

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

RNA-Seq: a revolutionary tool for transcriptomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Mapping and quantifying mammalian transcriptomes by RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

The transcriptional landscape of the yeast genome defined by RNA sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Direct multiplexed measurement of gene expression with color-coded probe pairs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Genome-wide mapping of in vivo protein-DNA interactions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Microfluidic digital PCR enables multigene analysis of individual environmental bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Theoretical uncertainty of measurements using quantitative polymerase chain reaction.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Measurement of the Number of Molecules of a Single mRNA Species in a Complex mRNA Preparation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Counting individual DNA molecules by the stochastic attachment of diverse labels

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

A two-hit trigger for siRNA biogenesis in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

Counting absolute numbers of molecules using unique molecular identifiers

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268301

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

25 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1118018109

21 January 2018

Identifiers

DOI

10.1073/PNAS.1118018109

1 reference

9 August 2017

0 references

1 reference

9 August 2017

1 reference