(Q35852353)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author

Ekaterina V. Putintseva

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Mikhail Shugay

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Dmitry M. Chudakov

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Dmitry A. Bolotin

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Olga Britanova

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Mikhail Pogorelyy

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Dmitriy V Bagaev

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Maria A Turchaninova

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Vadim I Nazarov

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Ivan V Zvyagin

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Vitalina I Kirgizova

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Kirill I Kirgizov

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Elena V Skorobogatova

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

publication date

25 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

1 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

e1004503

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

1 March 2020

copyright license

start time

25 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance

1 reference

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11 July 2018

1 reference

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Diversity and clonal selection in the human T-cell repertoire

11 July 2018

1 reference

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Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

11 July 2018

1 reference

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Improved survival with T cell clonotype stability after anti-CTLA-4 treatment in cancer patients

11 July 2018

1 reference

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Towards error-free profiling of immune repertoires.

11 July 2018

1 reference

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Immunoglobulin and T cell receptor gene high-throughput sequencing quantifies minimal residual disease in acute lymphoblastic leukemia and predicts post-transplantation relapse and survival

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Prognostic value of deep sequencing method for minimal residual disease detection in multiple myeloma

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

The promised land of human immunology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

T cell repertoire following autologous stem cell transplantation for multiple sclerosis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

The promise and challenge of high-throughput sequencing of the antibody repertoire.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells

11 July 2018

1 reference

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Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium

11 July 2018

1 reference

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The antibody mining toolbox: an open source tool for the rapid analysis of antibody repertoires

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Huge Overlap of Individual TCR Beta Repertoires.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Mother and child T cell receptor repertoires: deep profiling study.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Comparing CDRH3 diversity captured from secondary lymphoid organs for the generation of recombinant human antibodies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Specificity, promiscuity, and precursor frequency in immunoreceptors.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

IgBLAST: an immunoglobulin variable domain sequence analysis tool

11 July 2018

1 reference

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Estimating the ratio of CD4+ to CD8+ T cells using high-throughput sequence data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

11 July 2018

1 reference

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Bioinformatic approaches for functional annotation and pathway inference in metagenomics data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Deep-sequencing approach for minimal residual disease detection in acute lymphoblastic leukemia

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Counting absolute numbers of molecules using unique molecular identifiers

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Detection and quantification of rare mutations with massively parallel sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Overlap and effective size of the human CD8+ T cell receptor repertoire

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

The molecular basis for public T-cell responses?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Multiple sclerosis: T-cell receptor expression in distinct brain regions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Structural determinants of T-cell receptor bias in immunity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Multiple sclerosis: brain-infiltrating CD8+ T cells persist as clonal expansions in the cerebrospinal fluid and blood

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Counting the uncountable: statistical approaches to estimating microbial diversity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Clonal expansions of CD8(+) T cells dominate the T cell infiltrate in active multiple sclerosis lesions as shown by micromanipulation and single cell polymerase chain reaction

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

TCR usage, gene expression and function of two distinct FOXP3(+)Treg subsets within CD4(+)CD25(hi) T cells identified by expression of CD39 and CD45RO.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

MiXCR: software for comprehensive adaptive immunity profiling.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

TCRklass: a new K-string-based algorithm for human and mouse TCR repertoire characterization

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Next-generation sequencing and real-time quantitative PCR for minimal residual disease detection in B-cell disorders.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Biased usage and preferred pairing of α- and β-chains of TCRs specific for an immunodominant gluten epitope in coeliac disease.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

MiTCR: software for T-cell receptor sequencing data analysis.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Shaping of human germline IgH repertoires revealed by deep sequencing.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

High-throughput sequencing detects minimal residual disease in acute T lymphoblastic leukemia.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Memorizing innate instructions requires a sufficiently specific adaptive immune system.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Repertoire dynamics of autoreactive T cells in multiple sclerosis patients and healthy subjects: epitope spreading versus clonal persistence.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Circulating T cell repertoire complexity in normal individuals and bone marrow recipients analyzed by CDR3 size spectratyping. Correlation with immune status.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

Selection for T-cell receptor V beta-D beta-J beta gene rearrangements with specificity for a myelin basic protein peptide in brain lesions of multiple sclerosis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4659587

TCRBV20S1 polymorphism does not influence the susceptibility to type 1 diabetes and multiple sclerosis in the Sardinian population

6 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26606115

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

TCR -Chain Sharing in Human CD8+ T Cell Responses to Cytomegalovirus and EBV

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26606115

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Measurement of Diversity

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/163688A0

10.1371/JOURNAL.PCBI.1004503

24 October 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/ShugayBTBBPPNZK15

1 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26606115%20AND%20SRC:MED&resulttype=core&format=json