(Q35902162)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Joshua N Adkins

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Richard D. Smith

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

4

Matthew E Monroe

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

8

Ronald J Moore

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

11

David G Camp

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

10

Mary S Lipton

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

5

Eric F Strittmatter

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

author name string

Konstantinos Petritis

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Lars J Kangas

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Bo Yan

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Ying Xu

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

language of work or name

English

0 references

publication date

1 July 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

volume

78

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

page(s)

5026-5039

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

issue

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

27 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The utility of accurate mass and LC elution time information in the analysis of complex proteomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Mesoscopic simulation of adsorption of peptides in a hydrophobic chromatography system

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Systematic comparison of a two-dimensional ion trap and a three-dimensional ion trap mass spectrometer in proteomics.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Identification of proteins in human cytomegalovirus (HCMV) particles: the HCMV proteome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Integrative analysis of the mitochondrial proteome in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Standard mixtures for proteome studies

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Multidimensional proteome analysis of human mammary epithelial cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The arrangement of amino acids in proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Proteomic characterization of nipple aspirate fluid: identification of potential biomarkers of breast cancer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Probability-based validation of protein identifications using a modified SEQUEST algorithm

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Multiplex three-dimensional brain gene expression mapping in a mouse model of Parkinson's disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of protein cellular attributes using pseudo-amino acid composition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of protein subcellular locations by incorporating quasi-sequence-order effect

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Protein secondary structure prediction based on position-specific scoring matrices

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Comparison of the binding of alpha-helical and beta-sheet peptides to a hydrophobic surface.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The rational design of amino acid sequences by artificial neural networks and simulated molecular evolution: de novo design of an idealized leader peptidase cleavage site

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Induced conformational states of amphipathic peptides in aqueous/lipid environments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The helical hydrophobic moment: a measure of the amphiphilicity of a helix

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The hydrophobic moment detects periodicity in protein hydrophobicity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Three-dimensional structure of membrane and surface proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Effect of preferred binding domains on peptide retention behavior in reversed-phase chromatography: amphipathic alpha-helices.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of peptide retention at different HPLC conditions from multiple linear regression models.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Proteomic analysis of Lyme disease: global protein comparison of three strains of Borrelia burgdorferi

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Protein identification from product ion spectra of peptides validated by correlation between measured and predicted elution times in liquid chromatography/mass spectrometry

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of high-performance liquid chromatography retention of peptides with the use of quantitative structure-retention relationships.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Quantitative prediction of logk of peptides in high-performance liquid chromatography based on molecular descriptors by using the heuristic method and support vector machine.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Protein identification by liquid chromatography-mass spectrometry using retention time prediction.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

An alternative to tandem mass spectrometry: isoelectric point and accurate mass for the identification of peptides.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Temperature selectivity effects in reversed-phase liquid chromatography due to conformation differences between helical and non-helical peptides

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Ion-pair reversed-phase liquid chromatography-electrospray mass spectrometry for the analysis of underivatized small peptides

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of peptide retention times in normal-phase liquid chromatography with only a single gradient run.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Prediction of secondary structural content of proteins from their amino acid composition alone. I. New analytic vector decomposition methods

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Recognition of alpha-helical peptide structures using high-performance liquid chromatographic retention data for D-amino acid analogues: influence of peptide amphipathicity and of stationary phase hydrophobicity

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1924966

Effect of chain length on the formation and stability of synthetic alpha-helical coiled coils

24 September 2018

1 reference

12 December 2020

Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry

1 reference

12 December 2020

High-Throughput Proteomics Using High-Efficiency Multiple-Capillary Liquid Chromatography with On-Line High-Performance ESI FTICR Mass Spectrometry

1 reference

12 December 2020

Role of helix formation for the retention of peptides in reversed-phase high-performance liquid chromatography

1 reference

12 December 2020

Hydrophobic high-performance liquid chromatography of hormonal polypeptides and proteins on alkylsilane bonded silica

1 reference

12 December 2020

Utility of Accurate Mass Tags for Proteome-Wide Protein Identification

1 reference

12 December 2020

1 reference

12 December 2020

High-performance liquid chromatography of amino acids, peptides and proteins. LXIX. Evaluation of retention and bandwidth relationships of myosin-related peptides separated by gradient elution reversed-phase high-performance liquid chromatography

1 reference

12 December 2020

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

12 December 2020

Effect of peptide chain length on peptide retention behaviour in reversed-phase chromatography

1 reference

12 December 2020

Reversed-phase chromatography of synthetic amphipathic α-helical peptides as a model for ligand/receptor interactions Effect of changing hydrophobic environment on the relative hydrophilicity/hydrophobicity of amino acid side-chains

1 reference

12 December 2020

High-performance liquid chromatography of amino acids, peptides and proteins. CXXII. Application of experimentally derived retention coefficients to the prediction of peptide retention times: studies with myohemerythrin

1 reference

12 December 2020

Liquid chromatography-mass spectrometry approach for the characterization and purification of crude synthetic peptide hormones

1 reference

12 December 2020

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

1 reference

12 December 2020

Packed Capillary Reversed-Phase Liquid Chromatography with High-Performance Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for Proteomics

1 reference

12 December 2020

The isolation of peptides by high-performance liquid chromatography using predicted elution positions

1 reference

12 December 2020

Separation of some polypeptide hormones by high-performance liquid chromatography

1 reference

12 December 2020

Paper chromatography of some lower peptides

1 reference

12 December 2020

Evaluation of peptide-peptide interactions using reversed-phase high-performance liquid chromatography

1 reference

12 December 2020

Selectivity due to conformational differences between helical and non-helical peptides in reversed-phase chromatography

1 reference

12 December 2020

Anomalous reversed-phase high-performacne liquid chromatographic behavior of synthetic peptides related to antigenic helper T cell sites

1 reference

12 December 2020

Trapping the monomeric alpha-helical state during unfolding of coiled-coils by reversed-phase liquid chromatography

1 reference

12 December 2020

Calculations on paper chromatography of peptides

1 reference

12 December 2020

Identifiers

DOI

10.1021/AC060143P

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16841926%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference