(Q36281424)

English

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

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scholarly article

1 reference

Europe PubMed Central

13 August 2017

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes (English)

1 reference

Europe PubMed Central

13 August 2017

protein folding

0 references

Dave Thirumalai

2

object named as

Thirumalai D

1 reference

Europe PubMed Central

13 August 2017

author name string

Betancourt MR

1

1 reference

Europe PubMed Central

13 August 2017

publication date

1 February 1999

1 reference

Europe PubMed Central

13 August 2017

Protein Science

1 reference

Europe PubMed Central

13 August 2017

8

1 reference

Europe PubMed Central

13 August 2017

361-369

1 reference

Europe PubMed Central

13 August 2017

2

1 reference

Europe PubMed Central

13 August 2017

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

How to derive a protein folding potential? A new approach to an old problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Knowledge-based potentials for protein folding: what can we learn from known protein structures?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Structure-derived potentials and protein simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Reduced representation model of protein structure prediction: statistical potential and genetic algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Kinetics and thermodynamics of folding in model proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Knowledge-based potentials for proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Origins of structure in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

A simplified representation of protein conformations for rapid simulation of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

Comparison of database potentials and molecular mechanics force fields

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

30 September 2017

How do potentials derived from structural databases relate to "true" potentials?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

29 June 2018

Statistical potentials extracted from protein structures: how accurate are they?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

22 September 2018

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144252

22 September 2018

Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bonds

1 reference

https://pubmed.ncbi.nlm.nih.gov/10048329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Why do protein architectures have Boltzmann-like statistics?

1 reference

https://pubmed.ncbi.nlm.nih.gov/10048329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimized Monte Carlo data analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/10048329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models of protein interactions: how to choose one

1 reference

https://pubmed.ncbi.nlm.nih.gov/10048329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale

1 reference

https://pubmed.ncbi.nlm.nih.gov/10048329

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.8.2.361

1 reference

Europe PubMed Central

13 August 2017

1 reference

Europe PubMed Central

13 August 2017

1 reference

Europe PubMed Central

13 August 2017

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0 references

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