(Q36476571)

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Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes

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Europe PubMed Central

PMC publication ID

14 August 2017

Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes (English)

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Europe PubMed Central

PMC publication ID

14 August 2017

solution structure

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based on heuristic

inferred from title

11

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14 August 2017

12

object named as

Burkhard Rost

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14 August 2017

Gaetano T. Montelione

15

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Gaetano T Montelione

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14 August 2017

author name string

Robert Powers

1

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14 August 2017

Nebojsa Mirkovic

2

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14 August 2017

Sharon Goldsmith-Fischman

3

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14 August 2017

Thomas B Acton

4

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Europe PubMed Central

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14 August 2017

Yiwen Chiang

5

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Europe PubMed Central

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14 August 2017

Yuanpeng J Huang

6

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14 August 2017

Lichung Ma

7

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14 August 2017

P K Rajan

8

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14 August 2017

John R Cort

9

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14 August 2017

Michael A Kennedy

10

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14 August 2017

Barry Honig

13

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14 August 2017

Diana Murray

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14 August 2017

publication date

1 November 2005

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14 August 2017

Protein Science

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14 August 2017

14

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Europe PubMed Central

PMC publication ID

14 August 2017

11

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Europe PubMed Central

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14 August 2017

2849-2861

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Raster3D: photorealistic molecular graphics

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253226

30 September 2017

https://api.crossref.org/works/10.1110%2FPS.051666705

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An integrated platform for automated analysis of protein NMR structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253226

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253226

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The Xplor-NIH NMR molecular structure determination package

1 reference

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Archaea and the prokaryote-to-eukaryote transition

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253226

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The growth defect in Escherichia coli deficient in peptidyl-tRNA hydrolase is due to starvation for Lys-tRNA(Lys)

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/16251366

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1 reference

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based on heuristic

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Identifiers

10.1110/PS.051666705

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

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