(Q36570582)

English

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

scientific article published on January 2007

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

15 August 2017

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle (English)

1 reference

Europe PubMed Central

15 August 2017

Plasmodium falciparum

0 references

ATP-dependent RNA helicase DDX6

1 reference

10 September 2018

CCR4 domain-containing protein 1, putative

1 reference

10 September 2018

U6 snRNA-associated Sm-like protein LSm2, putative

1 reference

10 September 2018

exosome complex component CSL4, putative

1 reference

11 September 2018

U6 snRNA-associated Sm-like protein LSm3, putative

1 reference

11 September 2018

exoribonuclease, putative

1 reference

11 September 2018

mRNA-decapping enzyme subunit 1, putative

1 reference

11 September 2018

U6 snRNA-associated Sm-like protein LSm4, putative

1 reference

11 September 2018

U6 snRNA-associated Sm-like protein LSm7, putative

1 reference

11 September 2018

U6 snRNA-associated Sm-like protein LSm6, putative

1 reference

11 September 2018

exosome complex component RRP42, putative

1 reference

11 September 2018

exosome complex exonuclease RRP44

1 reference

12 September 2018

exosome complex component RRP45, putative

1 reference

12 September 2018

U6 snRNA-associated Sm-like protein LSm5, putative

1 reference

12 September 2018

poly(A)-specific ribonuclease PARN, putative

1 reference

12 September 2018

exosome complex exonuclease RRP6

1 reference

12 September 2018

ATP-dependent RNA helicase DDX6, putative

1 reference

24 September 2018

CCR4 domain-containing protein 1, putative

1 reference

24 September 2018

U6 snRNA-associated Sm-like protein LSm2, putative

1 reference

24 September 2018

U6 snRNA-associated Sm-like protein LSm3, putative

1 reference

24 September 2018

exoribonuclease, putative

1 reference

24 September 2018

mRNA-decapping enzyme subunit 1, putative

1 reference

25 September 2018

U6 snRNA-associated Sm-like protein LSm4, putative

1 reference

25 September 2018

U6 snRNA-associated Sm-like protein LSm7, putative

1 reference

25 September 2018

U6 snRNA-associated Sm-like protein LSm6, putative

1 reference

25 September 2018

exosome complex exonuclease RRP44, putative

1 reference

25 September 2018

exosome complex component RRP45, putative

1 reference

25 September 2018

U6 snRNA-associated Sm-like protein LSm5, putative

1 reference

25 September 2018

ATP-dependent RNA helicase DDX6

1 reference

19 December 2018

ATP-dependent RNA helicase DDX6, putative

1 reference

20 December 2018

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

CCR4-NOT transcription complex subunit 4, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

CCR4-NOT transcription complex subunit 4, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-NOT transcription complex subunit 4, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

CCR4-NOT transcription complex subunit 4, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

U6 snRNA-associated Sm-like protein LSm1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

mRNA-decapping enzyme 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

poly(A)-specific ribonuclease PARN, putative

0 references

object named as

Kael F Fischer

2

0 references

author name string

Jennifer L Shock

1

1 reference

Europe PubMed Central

15 August 2017

Joseph L DeRisi

3

1 reference

Europe PubMed Central

15 August 2017

publication date

1 January 2007

1 reference

Europe PubMed Central

15 August 2017

1 reference

Europe PubMed Central

15 August 2017

8

1 reference

Europe PubMed Central

15 August 2017

R134

1 reference

Europe PubMed Central

15 August 2017

7

1 reference

Europe PubMed Central

15 August 2017

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-7-r134

0 references

The highways and byways of mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Plasmodium post-genomics: better the bug you know?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Control of mRNA stability in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

The 'permeome' of the malaria parasite: an overview of the membrane transport proteins of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

The global distribution of clinical episodes of Plasmodium falciparum malaria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Messenger RNA turnover in eukaryotes: pathways and enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Roll Back Malaria: a failing global health campaign

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Action of actinomycin D on animal cells and viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Global control of gene expression in yeast by the Ccr4-Not complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Significance analysis of lexical bias in microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Precision and functional specificity in mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Computational modeling of eukaryotic mRNA turnover

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

The exosome of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Cluster analysis and display of genome-wide expression patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Protein and nucleic acid synthesis during synchronized growth of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

30 September 2017

Temporal relationships on macromolecular synthesis during the asexual cell cycle of Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

28 June 2018

3' gene regulatory elements required for expression of the Plasmodiumfalciparum developmental protein, Pfs25.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

21 September 2018

RNA polymerase II synthesizes antisense RNA in Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

21 September 2018

The roles of intersubunit interactions in exosome stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323219

21 September 2018

The transcript encoding the circumsporozoite antigen of Plasmodium berghei utilizes heterogeneous polyadenylation sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/17612404

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biosynthetic labeling of RNA with uracil phosphoribosyltransferase allows cell-specific microarray analysis of mRNA synthesis and decay

1 reference

https://pubmed.ncbi.nlm.nih.gov/17612404

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2007-8-7-R134

1 reference

Europe PubMed Central

15 August 2017

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

15 August 2017

1 reference

Europe PubMed Central

15 August 2017

ResearchGate publication ID

0 references

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