(Q36615907)

15 August 2017

1 reference

title

From in vivo to in silico biology and back (English)

1 reference

15 August 2017

Barbara Di Ventura

1

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15 August 2017

Caroline Lemerle

series ordinal

2

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15 August 2017

Konstantinos Michalodimitrakis

series ordinal

3

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15 August 2017

Luis Serrano

series ordinal

4

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15 August 2017

language of work or name

English

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publication date

1 October 2006

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15 August 2017

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15 August 2017

443

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15 August 2017

527-533

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15 August 2017

7111

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https://scigraph.springernature.com/pub.10.1038/nature05127

15 August 2017

0 references

cites work

Experimental and in silico analyses of glycolytic flux control in bloodstream form Trypanosoma brucei

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https://api.crossref.org/works/10.1038%2FNATURE05127

Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE05127

Analysis of optimality in natural and perturbed metabolic networks

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE05127

Cell division theory and individual-based modeling of microbial lag: part I. The theory of cell division.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Engineering stability in gene networks by autoregulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Combinatorial synthesis of genetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Eukaryotic cells are dynamically ordered or critical but not chaotic

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A formal language for computational systems biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Reverse engineering of biological complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Metabolic network structure determines key aspects of functionality and regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Fat synthesis in adipose tissue. An examination of stoichiometric constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Regulation of gene expression in flux balance models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Optimization-based framework for inferring and testing hypothesized metabolic objective functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Fluctuations-induced switch in the gene transcriptional regulatory system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Stochastic gene expression in fluctuating environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

The new bacterial cell biology: moving parts and subcellular architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Self-organisation and forces in the microtubule cytoskeleton

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Pattern formation by lateral inhibition with feedback: a mathematical model of delta-notch intercellular signalling.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE05127

Space as the final frontier in stochastic simulations of biological systems

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE05127

Macromolecular crowding: obvious but underappreciated

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE05127

Metabolic Engineering: Advances in Modeling and Intervention in Health and Disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Integrative model of the response of yeast to osmotic shock

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Using a quantitative blueprint to reprogram the dynamics of the flagella gene network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Computational modeling of the EGF-receptor system: a paradigm for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Mammalian cell-based optimization of the biarsenical-binding tetracysteine motif for improved fluorescence and affinity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Engineered gene circuits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Gene regulatory networks for development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Product dependence and bifunctionality compromise the ultrasensitivity of signal transduction cascades

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

At the pulse of time: protein interactions determine the pace of circadian clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Construction of a genetic toggle switch in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

An engineered epigenetic transgene switch in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Prediction and measurement of an autoregulatory genetic module

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Programmable cells: interfacing natural and engineered gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A synthetic oscillatory network of transcriptional regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A synthetic gene-metabolic oscillator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Design of artificial cell-cell communication using gene and metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Programmed population control by cell-cell communication and regulated killing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A synthetic multicellular system for programmed pattern formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

A stringently controlled expression system for analysing lateral gene transfer between bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Phase synchronization and coherence resonance of stochastic calcium oscillations in coupled hepatocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

Extension of a genetic network model by iterative experimentation and mathematical analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

The Roles of APC and Axin Derived from Experimental and Theoretical Analysis of the Wnt Pathway

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Electromechanics of paced left ventricle simulated by straightforward mathematical model: comparison with experiments

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Modeling and simulation of molecular biology systems using petri nets: modeling goals of various approaches

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Biochemical systems theory: operational differences among variant representations and their significance

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Stochastic resonance in biology. How noise can enhance detection of weak signals and help improve biological information processing

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Characterization of Ran-driven cargo transport and the RanGTPase system by kinetic measurements and computer simulation

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

An autoregulatory circuit for long-range self-organization in Dictyostelium cell populations

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Genome-scale models of microbial cells: evaluating the consequences of constraints

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Computer-aided resolution of an experimental paradox in bacterial chemotaxis

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Prediction and validation of the distinct dynamics of transient and sustained ERK activation

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Synthetic gene network for entraining and amplifying cellular oscillations

1 reference

https://api.crossref.org/works/10.1038%2FNATURE05127

7 January 2021

Identifiers

DOI

10.1038/NATURE05127

1 reference

15 August 2017

1 reference