(Q37022730)

English

Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms.

scientific article published on August 2008

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scholarly article

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18487131%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

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Europe PubMed Central

Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18487131%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

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Thomas E Hanson

2

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7 January 2020

Sriram Satagopan

3

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7 January 2020

author name string

F Robert Tabita

1

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7 January 2020

Brian H Witte

4

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7 January 2020

Nathan E Kreel

5

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7 January 2020

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1 August 2008

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7 January 2020

Philosophical Transactions of the Royal Society B

1 reference

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7 January 2020

363

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7 January 2020

2629-2640

1 reference

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7 January 2020

1504

1 reference

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7 January 2020

Function, Structure, and Evolution of the RubisCO-Like Proteins and Their RubisCO Homologs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

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29 September 2017

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

1 reference

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29 September 2017

Mechanistic diversity in the RuBisCO superfamily: the "enolase" in the methionine salvage pathway in Geobacillus kaustophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

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The Complete Chloroplast and Mitochondrial DNA Sequence of Ostreococcus tauri: Organelle Genomes of the Smallest Eukaryote Are Examples of Compaction

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29 September 2017

Can improvement in photosynthesis increase crop yields?

1 reference

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29 September 2017

Food for thought: lower-than-expected crop yield stimulation with rising CO2 concentrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

An unsupervised classification scheme for improving predictions of prokaryotic TIS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Was photosynthetic RuBisCO recruited by acquisitive evolution from RuBisCO-like proteins involved in sulfur metabolism?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

ProtTest: selection of best-fit models of protein evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Regulators of nonsulfur purple phototrophic bacteria and the interactive control of CO2 assimilation, nitrogen fixation, hydrogen metabolism and energy generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Modified pathway to synthesize ribulose 1,5-bisphosphate in methanogenic archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Community structure and metabolism through reconstruction of microbial genomes from the environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Synthesis of Catalytically Active Form III Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase in Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Rubisco: structure, regulatory interactions, and possibilities for a better enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Crystal structure of a novel-type archaeal rubisco with pentagonal symmetry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

A ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO)-like protein from Chlorobium tepidum that is involved with sulfur metabolism and the response to oxidative stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Unusual ribulose 1,5-bisphosphate carboxylase/oxygenase of anoxic Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its substrate, ribulose-1,5-bisphosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

29 September 2017

Glycine 176 affects catalytic properties and stability of the Synechococcus sp. strain PCC6301 ribulose-1,5-bisphosphate carboxylase/oxygenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

27 June 2018

A new rubisco-like protein coexists with a photosynthetic rubisco in the planktonic cyanobacteria Microcystis.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Presence of a structurally novel type ribulose-bisphosphate carboxylase/oxygenase in the hyperthermophilic archaeon, Pyrococcus kodakaraensis KOD1.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Insights into the stress response and sulfur metabolism revealed by proteome analysis of a Chlorobium tepidum mutant lacking the Rubisco-like protein.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Structure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii.

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Positive and negative selection of mutant forms of prokaryotic (cyanobacterial) ribulose-1,5-bisphosphate carboxylase/oxygenase

1 reference

https://api.crossref.org/works/10.1098%2FRSTB.2008.0023

21 January 2018

Crystal structure of the unactivated ribulose 1,5-bisphosphate carboxylase/oxygenase complexed with a transition state analog, 2-carboxy-D-arabinitol 1,5-bisphosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2606765

4 September 2018

The consistency of several phylogeny-inference methods under varying evolutionary rates

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487131

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Substitutions at methionine 295 of Archaeoglobus fulgidus ribulose-1,5-bisphosphate carboxylase/oxygenase affect oxygen binding and CO2/O2 specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487131

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1098/RSTB.2008.0023

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18487131%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18487131%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18487131%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

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