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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
scholarly article
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
title
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
author
Elisabeth Petfalski
series ordinal
3
object named as
Elisabeth Petfalski
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David Tollervey
series ordinal
4
object named as
David Tollervey
0 references
Sander Granneman
object named as
Sander Granneman
series ordinal
1
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Grzegorz Kudła
object named as
Grzegorz Kudla
series ordinal
2
0 references
language of work or name
English
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publication date
29 May 2009
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
published in
Proceedings of the National Academy of Sciences of the United States of America
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
volume
106
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
page(s)
9613-9618
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
issue
24
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stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
cites work
RNA immunoprecipitation for determining RNA-protein associations in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Improved identification of enriched peptide RNA cross-links from ribonucleoprotein particles (RNPs) by mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Distinct populations of primary and secondary effectors during RNAi in C. elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
CLIP: a method for identifying protein-RNA interaction sites in living cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
CLIP identifies Nova-regulated RNA networks in the brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
The hU3-55K protein requires 15.5K binding to the box B/C motif as well as flanking RNA elements for its association with the U3 small nucleolar RNA in Vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
A general approach for identification of RNA-protein cross-linking sites within native human spliceosomal small nuclear ribonucleoproteins (snRNPs). Analysis of RNA-protein contacts in native U1 and U4/U6.U5 snRNPs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Synthesis and assembly of the box C+D small nucleolar RNPs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
The rRNA-processing function of the yeast U14 small nucleolar RNA can be rescued by a conserved RNA helicase-like protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Isolation of U3 snoRNP from CHO cells: a novel 55 kDa protein binds to the central part of U3 snoRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
The yeast homologue of U3 snRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Ultraviolet light-induced crosslinking of mRNA to proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
6 September 2017
Efficient RNA 2'-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C'/D' RNPs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
14 September 2017
Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
28 September 2017
Elongator interactions with nascent mRNA revealed by RNA immunoprecipitation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688437
retrieved
3 September 2018
Identifiers
DOI
10.1073/PNAS.0901997106
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
ADS bibcode
2009PNAS..106.9613G
0 references
PMCID
2688437
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
PubMed ID
19482942
1 reference
stated in
Europe PubMed Central
PMCID
2688437
retrieved
18 August 2017
ResearchGate publication ID
26253853
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